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BaseInfo

ncRNA ID novel_zma_miR11980
Species Zea mays
Class miRNA
Genome position Chr8:94788641-94788685 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 21
Mature sequence(if miRNA) 1 - AAUUCUAGCUGUUGAACGCAC - 21
Stem-loop(if miRNA) --     U  C   UG  -C  AC
  AAUUC AG UGU  AA  GC  U
  ||||| || |||  ||  ||
  UUAAG UC AUA  UU  CG  C
CU     -  -   GU  AC  GU
Stem-loop sequence AAUUCUAGCUGUUGAACGCACUCUGGCCAUUUGAUACUGAAUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ076485.1
ncRNA:21   CACGCAAGUUGUCGAUCUUAA   1
  |||||||||||||||||||||
targets:87   GUGCGUUCAACAGCUAGAAUU   107

0.0 TSA: Zea mays contig12122, mRNA sequence NA coding protein psRNATarget