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BaseInfo

ncRNA ID	novel_zma_miR11954
Species	Zea mays
Class	miRNA
Genome position	Chr8:88279533-88279735 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	20
Mature sequence(if miRNA)	184 - AUGAUAUCAUAUGUAGACGC - 203
Stem-loop(if miRNA)	--                 C  UA         A                                                          CA      CA   AUGAUAUCAUAUGUAGA GC  UGAUAAAAA UUGAAAAAGUUUCGAGAAAACUGUGACGCACUAUGUGUAGAAACCUAAGAGAUCUACA  UGAAAU  U   ||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||   UACUAUAGUAUACAUCU CG  ACUAUUUUU AACUUUUUCAAAGCUCUUUUGACACUGCGUGAUACACAUCUUUGGAUUCUCUAGGUGU  ACUUUG  A AG                 C  UC         A                                                          -A      AG
Stem-loop sequence	AUGAUAUCAUAUGUAGACGCUAUGAUAAAAAAUUGAAAAAGUUUCGAGAAAACUGUGACGCACUAUGUGUAGAAACCUAAGAGAUCUACACAUGAAAUCAUAGAGUUUCAAUGUGGAUCUCUUAGGUUUCUACACAUAGUGCGUCACAGUUUUCUCGAAACUUUUUCAAAUUUUUAUCACUGCCUCUACAUAUGAUAUCAUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ089840.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   ||*||||||||||||||||| targets:4   GCCUCUACAUAUGAUAUCAU   23 Target Full Sequence	1.0	TSA: Zea mays contig25486, mRNA sequence	NA	coding protein	psRNATarget
JB163670.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   ||*||||||||||||||||| targets:208   GCCUCUACAUAUGAUAUCAU   227 Target Full Sequence	1.0	Sequence 1334 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235339.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   ||*||||||||||||||||| targets:208   GCCUCUACAUAUGAUAUCAU   227 Target Full Sequence	1.0	Sequence 1334 from Patent EP2985353	NA	coding protein	psRNATarget
HI403209.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   ||*||||||||||||||||| targets:208   GCCUCUACAUAUGAUAUCAU   227 Target Full Sequence	1.0	Sequence 1334 from Patent EP2074227	NA	coding protein	psRNATarget
EZ077420.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   **|||||||||||||||=|| targets:130   AAGUCUACAUAUGAUAUUAU   149 Target Full Sequence	2.5	TSA: Zea mays contig13057, mRNA sequence	NA	coding protein	psRNATarget
KM399006.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   **|||||||||||||||=|| targets:1381   AAGUCUACAUAUGAUAUUAU   1400 Target Full Sequence	2.5	Zea mays ABH1 mRNA, partial cds	NA	coding protein	psRNATarget
XM_008657372.2	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   **|||||||||||||||=|| targets:1672   AAGUCUACAUAUGAUAUUAU   1691 Target Full Sequence	2.5	PREDICTED: Zea mays nuclear cap-binding protein subunit 1 (LOC100384700), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020546375.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   **|||||||||||||||=|| targets:1801   AAGUCUACAUAUGAUAUUAU   1820 Target Full Sequence	2.5	PREDICTED: Zea mays nuclear cap-binding protein subunit 1 (LOC100384700), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   *|*||||=|||||||||||| targets:202   ACCUCUAUAUAUGAUAUCAU   221 Target Full Sequence	2.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   *|*||||=|||||||||||| targets:202   ACCUCUAUAUAUGAUAUCAU   221 Target Full Sequence	2.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   *|*||||=|||||||||||| targets:202   ACCUCUAUAUAUGAUAUCAU   221 Target Full Sequence	2.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   *|*|*||||||||||||||| targets:202   ACCUGUACAUAUGAUAUCAU   221 Target Full Sequence	2.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
HI403220.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   *|*|*||||||||||||||| targets:202   ACCUGUACAUAUGAUAUCAU   221 Target Full Sequence	2.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
JB163681.1	ncRNA:20   CGCAGAUGUAUACUAUAGUA   1   *|*|*||||||||||||||| targets:202   ACCUGUACAUAUGAUAUCAU   221 Target Full Sequence	2.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget