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BaseInfo

ncRNA ID	novel_zma_miR11952
Species	Zea mays
Class	miRNA
Genome position	Chr8:95602439-95602501 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	23
Mature sequence(if miRNA)	41 - AUAAAUUGUCAAAUAUAGAAACU - 63
Stem-loop(if miRNA)	-AU                      A  UAG    AAAUUGUCAAAUAUAGAAACUA AA   A    |||||||||||||||||||||| ||    UUUAAUAGUUUAUAUCUUUGAU UU   G GGU                      G  UUU
Stem-loop sequence	AUAAAUUGUCAAAUAUAGAAACUAAAAUAGAGUUUUUGUAGUUUCUAUAUUUGAUAAUUUUGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI402995.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||||||||||||||||||| targets:96   AGUUUCUAUAUUUGACAAUUUAU   118 Target Full Sequence	0.0	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget
JB163456.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||||||||||||||||||| targets:96   AGUUUCUAUAUUUGACAAUUUAU   118 Target Full Sequence	0.0	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||||||||||||||||||| targets:96   AGUUUCUAUAUUUGACAAUUUAU   118 Target Full Sequence	0.0	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
EU956677.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   |||||=||||||||||||||||| targets:2104   AGUUUUUAUAUUUGACAAUUUAU   2126 Target Full Sequence	1.0	Zea mays clone 1570443 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||||||||||=|||||||| targets:136   AGUUUCUAUAUUUGGCAAUUUAU   158 Target Full Sequence	1.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
JB163556.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||||||||||=|||||||| targets:79   AGUUUCUAUAUUUGGCAAUUUAU   101 Target Full Sequence	1.5	Sequence 1220 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235225.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||||||||||=|||||||| targets:79   AGUUUCUAUAUUUGGCAAUUUAU   101 Target Full Sequence	1.5	Sequence 1220 from Patent EP2985353	NA	coding protein	psRNATarget
HI403095.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||||||||||=|||||||| targets:79   AGUUUCUAUAUUUGGCAAUUUAU   101 Target Full Sequence	1.5	Sequence 1220 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020542840.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   |||||||||||||*||||||||| targets:1064   AGUUUCUAUAUUUAACAAUUUAU   1086 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT036582.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   |*||||||||||||||||||||| targets:907   AAUUUCUAUAUUUGACAAUUUAU   929 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0124H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139183.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   |*||||||||||||||||||||| targets:907   AAUUUCUAUAUUUGACAAUUUAU   929 Target Full Sequence	0.0	Zea mays hypothetical protein (LOC100194130), mRNA	NA	coding protein	psRNATarget
XM_020547858.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   |||||||||||||||||||||** targets:1633   AGUUUCUAUAUUUGACAAUUUUG   1655 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100382535 (LOC100382535), transcript variant X3, mRNA	NA	coding protein	psRNATarget
JB163501.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   |||||||||||||||||||||** targets:96   AGUUUCUAUAUUUGACAAUUUUG   118 Target Full Sequence	2.5	Sequence 1165 from Patent EP2559767	NA	coding protein	psRNATarget
HI403040.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   |||||||||||||||||||||** targets:96   AGUUUCUAUAUUUGACAAUUUUG   118 Target Full Sequence	2.5	Sequence 1165 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235170.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   |||||||||||||||||||||** targets:96   AGUUUCUAUAUUUGACAAUUUUG   118 Target Full Sequence	2.5	Sequence 1165 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020553397.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||||*|||||=|||||||| targets:644   AGUUUCUAAAUUUGGCAAUUUAU   666 Target Full Sequence	2.5	PREDICTED: Zea mays SANT/MYB protein (LOC100284980), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647122.2	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||*|||||||||||||||* targets:3054   AGUUUCCAUAUUUGACAAUUUAG   3076 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008647123.2	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||*|||||||||||||||* targets:2665   AGUUUCCAUAUUUGACAAUUUAG   2687 Target Full Sequence	2.0	PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI407135.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   |||||||||||||*||||||||* targets:47   AGUUUCUAUAUUUAACAAUUUAG   69 Target Full Sequence	2.5	Sequence 5260 from Patent EP2074227	NA	coding protein	psRNATarget
JB167596.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   |||||||||||||*||||||||* targets:47   AGUUUCUAUAUUUAACAAUUUAG   69 Target Full Sequence	2.5	Sequence 5260 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239265.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   |||||||||||||*||||||||* targets:47   AGUUUCUAUAUUUAACAAUUUAG   69 Target Full Sequence	2.5	Sequence 5260 from Patent EP2985353	NA	coding protein	psRNATarget
HI403360.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||*||||||*||||||||| targets:60   AGUUUCCAUAUUUAACAAUUUAU   82 Target Full Sequence	2.5	Sequence 1485 from Patent EP2074227	NA	coding protein	psRNATarget
JB163821.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||*||||||*||||||||| targets:60   AGUUUCCAUAUUUAACAAUUUAU   82 Target Full Sequence	2.5	Sequence 1485 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235490.1	ncRNA:23   UCAAAGAUAUAAACUGUUAAAUA   1   ||||||*||||||*||||||||| targets:60   AGUUUCCAUAUUUAACAAUUUAU   82 Target Full Sequence	2.5	Sequence 1485 from Patent EP2985353	NA	coding protein	psRNATarget