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BaseInfo

ncRNA ID	novel_zma_miR11946
Species	Zea mays
Class	miRNA
Genome position	Chr8:21507994-21508040 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	23
Mature sequence(if miRNA)	25 - AUGACACUCGGCAAAGUAUACUU - 47
Stem-loop(if miRNA)	--A                  UA    UAUACUUUGCCGAGUGUC  G    ||||||||||||||||||  A    AUAUGAAACGGCUCACAG  G UUC                  UA
Stem-loop sequence	AUAUACUUUGCCGAGUGUCUAGAGAUGACACUCGGCAAAGUAUACUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067215.1	ncRNA:23   UUCAUAUGAAACGGCUCACAGUA   1   |||*||||||||||||||||||| targets:1439   AAGCAUACUUUGCCGAGUGUCAU   1461 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0310H18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175109.1	ncRNA:23   UUCAUAUGAAACGGCUCACAGUA   1   |||*||||||||||||||||||| targets:1576   AAGCAUACUUUGCCGAGUGUCAU   1598 Target Full Sequence	0.0	Zea mays 1-aminocyclopropane-1-carboxylate oxidase2 (cl955_1), mRNA	NA	coding protein	psRNATarget
BT064046.1	ncRNA:23   UUCAUAUGAAACGGCUCACAGUA   1   |||*||||||||||||||||||| targets:1576   AAGCAUACUUUGCCGAGUGUCAU   1598 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFc0133L10 mRNA, complete cds	NA	coding protein	psRNATarget
HI406492.1	ncRNA:23   UUCAUAUGAAACGGCUCACAGUA   1   |||*=||||*||||||||||||* targets:22   AAGCGUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238622.1	ncRNA:23   UUCAUAUGAAACGGCUCACAGUA   1   |||*=||||*||||||||||||* targets:22   AAGCGUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2985353	NA	coding protein	psRNATarget
JB166953.1	ncRNA:23   UUCAUAUGAAACGGCUCACAGUA   1   |||*=||||*||||||||||||* targets:22   AAGCGUACUGUGCCGAGUGUCAG   44 Target Full Sequence	3.0	Sequence 4617 from Patent EP2559767	NA	coding protein	psRNATarget
EU952231.1	ncRNA:23   UUCAUAUGAAACGGCUCACAGUA   1   ||--|||||||||||||||||** targets:1443   AA--AUACUUUGCCGAGUGUCCA   1463 Target Full Sequence	2.5	Zea mays clone 1234152 mRNA sequence	NA	coding protein	psRNATarget
EU961427.1	ncRNA:23   UUCAUAUGAAACGGCUCACAGUA   1   |||*||*||||||||||*||||| targets:339   AAGGAUUCUUUGCCGAGAGUCAU   361 Target Full Sequence	2.5	Zea mays clone 235362 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU949560.1	ncRNA:23   UUCAUAUGAAACGGCUCACAGUA   1   ||--|*||||||||||||||||* targets:626   AA--AAACUUUGCCGAGUGUCAA   646 Target Full Sequence	2.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget