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BaseInfo

ncRNA ID	novel_zma_miR11944
Species	Zea mays
Class	miRNA
Genome position	Chr1:159435492-159435662 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	148 - UUAGUCUAUAGAAACCAAACACCU - 171
Stem-loop(if miRNA)	--              -   A            AU                  -   U      C  A     AUA         CU   GUGUUUGGUUUCUA AGA CUAAUUUUUAGU  CUUCAUUUUAUUUUAUUU GGU CCUAAA UG CAAAU   GAAAUUAAA  C   |||||||||||||| ||| ||||||||||||  |||||||||||||||||| ||| |||||| || |||||   |||||||||   CACAAACCAAAGAU UCU GAUUAAAAAUCG  GAGGUAAAAUAAAGUAAA UCA GGAUUU AU GUUUA   CUUUGAUUU  U UC              A   -            GG                  A   U      A  G     GGC         UA
Stem-loop sequence	GUGUUUGGUUUCUAAGAACUAAUUUUUAGUAUCUUCAUUUUAUUUUAUUUGGUUCCUAAACUGACAAAUAUAGAAAUUAAACUCUAUUUUAGUUUCCGGAUUUGGUAAUUUAGGUACUAAAAUGAAAUAAAAUGGAGGGGCUAAAAAUUAGUCUAUAGAAACCAAACACCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676145.2	ncRNA:24   UCCACAAACCAAAGAUAUCUGAUU   1   |||||||||||||||||=|||||| targets:828   AGGUGUUUGGUUUCUAUGGACUAA   851 Target Full Sequence	1.5	PREDICTED: Zea mays 23 kDa jasmonate-induced protein-like (LOC103650571), mRNA	NA	coding protein	psRNATarget
EU967404.1	ncRNA:24   UCC--ACAAACCAAAGAUAUCUGAUU   1   |||--|||||||||||||||||=||| targets:1000   AGGAGUGUUUGGUUUCUAUAGAUUAA   1025 Target Full Sequence	1.5	Zea mays clone 302545 GTPase activating protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138696.1	ncRNA:24   UCC--ACAAACCAAAGAUAUCUGAUU   1   |||--|||||||||||||||||=||| targets:1000   AGGAGUGUUUGGUUUCUAUAGAUUAA   1025 Target Full Sequence	1.5	Zea mays uncharacterized LOC100193590 (umc2776), mRNA	NA	coding protein	psRNATarget
EU956677.1	ncRNA:24   UCCACAAACCAAAGAUAUCUGAUU   1   =|||||||||||||||*||||||| targets:2010   GGGUGUUUGGUUUCUAGAGACUAA   2033 Target Full Sequence	1.5	Zea mays clone 1570443 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678837.2	ncRNA:24   UCCACAAACCAAAGAUAUCUGAUU   1   =|||*||||||||||||=|||||= targets:2391   GGGUAUUUGGUUUCUAUGGACUAG   2414 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678835.2	ncRNA:24   UCCACAAACCAAAGAUAUCUGAUU   1   =|||*||||||||||||=|||||= targets:2380   GGGUAUUUGGUUUCUAUGGACUAG   2403 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551472.1	ncRNA:24   UCCACAAACCAAAGAUAUCUGAUU   1   =|||*||||||||||||=|||||= targets:2207   GGGUAUUUGGUUUCUAUGGACUAG   2230 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020551471.1	ncRNA:24   UCCACAAACCAAAGAUAUCUGAUU   1   =|||*||||||||||||=|||||= targets:2205   GGGUAUUUGGUUUCUAUGGACUAG   2228 Target Full Sequence	2.5	PREDICTED: Zea mays Outer envelope protein 64 chloroplastic (pco120561), transcript variant X3, mRNA	NA	coding protein	psRNATarget
AY104339.1	ncRNA:24   UCCACAAACCAAAGAUAUCUGAUU   1   =|||*||||||||||||=|||||= targets:1682   GGGUAUUUGGUUUCUAUGGACUAG   1705 Target Full Sequence	2.5	Zea mays PCO120561 mRNA sequence	NA	coding protein	psRNATarget
NM_001111805.2	ncRNA:24   UCC--ACAAACCAAAGAUAUCUGAUU   1   |||--|||||*|||||||*||||||| targets:1476   AGGGAUGUUUUGUUUCUAGAGACUAA   1501 Target Full Sequence	2.5	Zea mays uncharacterized LOC542191 (TIDP2941), mRNA	NA	coding protein	psRNATarget
AY104678.1	ncRNA:24   UCC--ACAAACCAAAGAUAUCUGAUU   1   |||--|||||*|||||||*||||||| targets:1465   AGGGAUGUUUUGUUUCUAGAGACUAA   1490 Target Full Sequence	2.5	Zea mays PCO081661 mRNA sequence	NA	coding protein	psRNATarget
XM_008645546.2	ncRNA:24   UCC-ACAAACCAAAGAUAUCUGAUU   1   =||-|||||*|||||||*||||||| targets:1830   GGGAUGUUUAGUUUCUAAAGACUAA   1854 Target Full Sequence	2.5	PREDICTED: Zea mays catalytic/ hydrolase (LOC100284064), transcript variant X1, mRNA	NA	coding protein	psRNATarget