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BaseInfo

ncRNA ID novel_zma_miR11940
Species Zea mays
Class miRNA
Genome position Chr8:160180861-160180916 [-]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 33 - CCCAACUGUUAGGGUUCUGAUGGU - 56
Stem-loop(if miRNA) --     -C       -    UG     U
  CCCAA  UGUUAGG GUUC  AUGGU U
  |||||  ||||||| ||||  |||||
  GGGUU  ACAGUCU CGAG  UGCCA C
CG     CA       U    GU     G
Stem-loop sequence CCCAACUGUUAGGGUUCUGAUGGUUUCGACCGUUGGAGCUUCUGACAACUUGGGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008650945.1
ncRNA:24   UGGU--AGUCUUGGGAUUGUCAACCC   1
  *|||--||*||||||||||=||||||
targets:1025   CCCAGCUCCGAACCCUAACGGUUGGG   1050

2.5 PREDICTED: Zea mays uncharacterized LOC103629851 (LOC103629851), mRNA NA coding protein psRNATarget
EU952069.1
ncRNA:24   UGGU--AGUCUUGGGAUUGUCAACCC   1
  *|||--||*||||||||||=||||||
targets:1033   CCCAGCUCCGAACCCUAACGGUUGGG   1058

2.5 Zea mays clone 1155789 hypothetical protein mRNA, complete cds NA coding protein psRNATarget