Search result

BaseInfo

ncRNA ID	osa-miRf10789-npr
Species	Oryza sativa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	PNRD
Length	21
Mature sequence(if miRNA)	NA - GCUCGUUAUCCUAGCGAGCUA - NA
Stem-loop(if miRNA)	--C           A          -    CG GGU   UGGCUCGUUAG AUAAUGAGCU AGCU  G |||   ||||||||||| |||||||||| |||| CCA   AUCGAGCGAUC UAUUGCUCGG UCGG  C    AAA           C          C    CU
Stem-loop sequence	GGUCUGGCUCGUUAGAAUAAUGAGCUAGCUCGGCUCGGCUCGGCUCGUUAUCCUAGCGAGCUAAAAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK109175.1	ncRNA:21   AUCGAGCGAUCCUAUUGCUCG   1   |||||||=||||||||||||| targets:559   UAGCUCGUUAGGAUAACGAGC   579 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:002-155-H10, full insert sequence	NA	coding protein	psRNATarget
XM_015793085.1	ncRNA:21   AUCGAGCGAUCCUAUUGCUCG   1   |||||||=||||||||||||| targets:557   UAGCUCGUUAGGAUAACGAGC   577 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281835 (LOC107281835), transcript variant X1, mRNA	uncharacterized LOC107281835(LOC107281835)	coding protein	psRNATarget
XM_015793088.1	ncRNA:21   AUCGAGCGAUCCUAUUGCUCG   1   |||||||=||||||||||||| targets:569   UAGCUCGUUAGGAUAACGAGC   589 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group uncharacterized LOC107281835 (LOC107281835), transcript variant X3, mRNA	uncharacterized LOC107281835(LOC107281835)	coding protein	psRNATarget
XM_015757797.1	ncRNA:21   AUCGAGCGAUCCUAUUGCUCG   1   |||||||=||||||||||||| targets:538   UAGCUCGUUAGGAUAACGAGC   558 Target Full Sequence	1.0	PREDICTED: Oryza sativa Japonica Group wall-associated receptor kinase 1 (LOC4347988), transcript variant X1, mRNA	wall-associated receptor kinase 1(LOC4347988)	coding protein	psRNATarget
XM_015779748.1	ncRNA:21   AUCGAGCGAUCCUAUUGCUCG   1   *||||||=||||||||||||= targets:243   AAGCUCGUUAGGAUAACGAGU   263 Target Full Sequence	2.0	PREDICTED: Oryza sativa Japonica Group cyclic dof factor 2 (LOC4324267), mRNA	cyclic dof factor 2(LOC4324267)	coding protein	psRNATarget
XM_015771083.1	ncRNA:21   AUCGAGCGAUCCUAUUGCUCG   1   |||||||=|||*||||||||| targets:186   UAGCUCGUUAGAAUAACGAGC   206 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group probable purine permease 11 (LOC4330368), transcript variant X1, mRNA	probable purine permease 11(LOC4330368)	coding protein	psRNATarget
AK107074.1	ncRNA:21   AUCGAGCGAUCCUAUUGCUCG   1   |||||||=|*||||||||||| targets:602   UAGCUCGUUUGGAUAACGAGC   622 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:002-121-F02, full insert sequence	NA	coding protein	psRNATarget
AK065336.1	ncRNA:21   AUCGAGCGAUCCUAUUGCUCG   1   |||||||=|||*||||||||| targets:558   UAGCUCGUUAGAAUAACGAGC   578 Target Full Sequence	2.5	Oryza sativa Japonica Group cDNA clone:J013000O22, full insert sequence	NA	coding protein	psRNATarget
XM_015784040.1	ncRNA:21   AUCGAGCGAUCCUAUUGCUCG   1   |||||||=|*||||||||||| targets:299   UAGCUCGUUUGGAUAACGAGC   319 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group hypersensitive-induced response protein 1 (LOC4339791), transcript variant X2, mRNA	hypersensitive-induced response protein 1(LOC4339791)	coding protein	psRNATarget
AK288737.1	ncRNA:21   AUCGAGCGAUCCUAUUGCUCG   1   ||||||*=||||||||||||| targets:1918   UAGCUCAUUAGGAUAACGAGC   1938 Target Full Sequence	2.0	Oryza sativa Japonica Group cDNA, clone: J090063M20, full insert sequence	NA	coding protein	psRNATarget