Search result

BaseInfo

ncRNA ID	novel_zma_miR11914
Species	Zea mays
Class	miRNA
Genome position	Chr8:104217601-104217675 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	21
Mature sequence(if miRNA)	1 - GACACUCGGCAAAGAAACUUC - 21
Stem-loop(if miRNA)	--               AAC                UU   GACACUCGGCAAAGA   UUCUUUGCCGAGUGUC  U   |||||||||||||||   ||||||||||||||||  U   CUGUGAGCCGUUUCU   GGGAAACGGCUCACAG  U CA               --C                UU
Stem-loop sequence	GACACUCGGCAAAGAAACUUCUUUGCCGAGUGUCUUUUUUUGACACUCGGCAAAGGGCUCUUUGCCGAGUGUCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001165647.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   *|||||||||||=|||||||= targets:82   AAAGUUUCUUUGUCGAGUGUU   102 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   *|||||||||||=|||||||= targets:82   AAAGUUUCUUUGUCGAGUGUU   102 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   *|||||||||||=|||||||= targets:2101   AAAGUUUCUUUGUCGAGUGUU   2121 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   *|||||||||||=|||||||= targets:2101   AAAGUUUCUUUGUCGAGUGUU   2121 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238622.1	ncRNA:21   CUUCAAA-GAAACGGCUCACAG   1   *||||||-=||||||||||||| targets:62   AAAGUUUGUUUUGCCGAGUGUC   83 Target Full Sequence	3.0	Sequence 4617 from Patent EP2985353	NA	coding protein	psRNATarget
JB166953.1	ncRNA:21   CUUCAAA-GAAACGGCUCACAG   1   *||||||-=||||||||||||| targets:62   AAAGUUUGUUUUGCCGAGUGUC   83 Target Full Sequence	3.0	Sequence 4617 from Patent EP2559767	NA	coding protein	psRNATarget
HI406492.1	ncRNA:21   CUUCAAA-GAAACGGCUCACAG   1   *||||||-=||||||||||||| targets:62   AAAGUUUGUUUUGCCGAGUGUC   83 Target Full Sequence	3.0	Sequence 4617 from Patent EP2074227	NA	coding protein	psRNATarget
HI406041.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   ||||*|*|||||||||||||| targets:137   GAAGCUACUUUGCCGAGUGUC   157 Target Full Sequence	2.0	Sequence 4166 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238171.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   ||||*|*|||||||||||||| targets:137   GAAGCUACUUUGCCGAGUGUC   157 Target Full Sequence	2.0	Sequence 4166 from Patent EP2985353	NA	coding protein	psRNATarget
JB166502.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   ||||*|*|||||||||||||| targets:137   GAAGCUACUUUGCCGAGUGUC   157 Target Full Sequence	2.0	Sequence 4166 from Patent EP2559767	NA	coding protein	psRNATarget
EU949560.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   *|=|*|||||||||||||||= targets:588   AAGGGUUCUUUGCCGAGUGUU   608 Target Full Sequence	3.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   **||*|||||||||||||||* targets:178   AUAGGUUCUUUGCCGAGUGUA   198 Target Full Sequence	2.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   **||*|||||||||||||||* targets:178   AUAGGUUCUUUGCCGAGUGUA   198 Target Full Sequence	2.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
HI406962.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   **||*|||||||||||||||* targets:178   AUAGGUUCUUUGCCGAGUGUA   198 Target Full Sequence	2.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   **||*|||||||||||||||= targets:2   UUAGGUUCUUUGCCGAGUGUU   22 Target Full Sequence	2.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
JB169026.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   **||*|||||||||||||||= targets:2   UUAGGUUCUUUGCCGAGUGUU   22 Target Full Sequence	2.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
HI408565.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   **||*|||||||||||||||= targets:2   UUAGGUUCUUUGCCGAGUGUU   22 Target Full Sequence	2.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
JB167146.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   **||*|||||||||||||||* targets:41   AUAGGUUCUUUGCCGAGUGUA   61 Target Full Sequence	2.0	Sequence 4810 from Patent EP2559767	NA	coding protein	psRNATarget
HI406685.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   **||*|||||||||||||||* targets:41   AUAGGUUCUUUGCCGAGUGUA   61 Target Full Sequence	2.0	Sequence 4810 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238815.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   **||*|||||||||||||||* targets:41   AUAGGUUCUUUGCCGAGUGUA   61 Target Full Sequence	2.0	Sequence 4810 from Patent EP2985353	NA	coding protein	psRNATarget
HI407108.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   *|||*||*||||||||||||= targets:7   AAAGCUUAUUUGCCGAGUGUU   27 Target Full Sequence	3.0	Sequence 5233 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239238.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   *|||*||*||||||||||||= targets:7   AAAGCUUAUUUGCCGAGUGUU   27 Target Full Sequence	3.0	Sequence 5233 from Patent EP2985353	NA	coding protein	psRNATarget
JB167569.1	ncRNA:21   CUUCAAAGAAACGGCUCACAG   1   *|||*||*||||||||||||= targets:7   AAAGCUUAUUUGCCGAGUGUU   27 Target Full Sequence	3.0	Sequence 5233 from Patent EP2559767	NA	coding protein	psRNATarget