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BaseInfo

ncRNA ID novel_zma_miR11909
Species Zea mays
Class miRNA
Genome position Chr7:84109518-84109593 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 23
Mature sequence(if miRNA) 1 - AGAAUGUAACACCCUGAAUUUGG - 23
Stem-loop(if miRNA) --   AU        C         -   GAA     UU
  AGA  GUAACACC UGAAUUUGG GGG   UAAAA  U
  |||  |||||||| ||||||||| |||   |||||
  UCU  CAUUGUGG ACUUAAACC CUU   AUUUU  A
CU   CU        -         A   AUA     UU
Stem-loop sequence AGAAUGUAACACCCUGAAUUUGGGGGGAAUAAAAUUUAUUUUUUAAUAUUCACCAAAUUCAGGUGUUACUCUCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008669578.2
ncRNA:23   GG--UUUAAGUCCCACAAUGUAAGA   1
  ||--|||||||||||||||||*||*
targets:2286   CCUAAAAUUCAGGGUGUUACAAUCG   2310

2.5 PREDICTED: Zea mays uncharacterized LOC100279556 (LOC100279556), transcript variant X1, mRNA NA coding protein psRNATarget