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BaseInfo

ncRNA ID novel_zma_miR11908
Species Zea mays
Class miRNA
Genome position Chr7:6120798-6120860 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 1 - UUUUUUGCUCAGUUUUGCCCUUCU - 24
Stem-loop(if miRNA) --                        -  U U
  UUUUUUGCUCAGUUUUGCCCUUCU GU C A
  |||||||||||||||||||||||| || |
  AAAAAACGAGUCAAAAUGGGAAGG CA G U
AC                        U  C A
Stem-loop sequence UUUUUUGCUCAGUUUUGCCCUUCUGUUCUAUAGCACUGGAAGGGUAAAACUGAGCAAAAAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU941282.1
ncRNA:24   UCUUCCCGUUUUGACUCGUUUUUU   1
  =*||||||||||||||||||||||
targets:454   GAAAGGGCAAAACUGAGCAAAAAA   477

0.0 Zea mays clone 1443200 mRNA sequence NA coding protein psRNATarget
BT040464.1
ncRNA:24   UCUUCCCGUUUUGACUCGUUUUUU   1
  =|||*||||||||||||=||||||
targets:437   GGAAAGGCAAAACUGAGUAAAAAA   460

1.5 Zea mays full-length cDNA clone ZM_BFc0095K06 mRNA, complete cds NA coding protein psRNATarget
BT055615.2
ncRNA:24   UCUUCCCGUUUUGACUCGUUUUUU   1
  =||=|||=|||||||||*||||||
targets:81   GGAGGGGUAAAACUGAGAAAAAAA   104

2.5 Zea mays full-length cDNA clone ZM_BFc0072O22 mRNA, complete cds NA coding protein psRNATarget
BT061928.1
ncRNA:24   UCUUCCCGUUUUGACUCGUUUUUU   1
  |||||*|||||||||||*||||||
targets:528   AGAAGAGCAAAACUGAGAAAAAAA   551

2.5 Zea mays full-length cDNA clone ZM_BFb0198J17 mRNA, complete cds NA coding protein psRNATarget
BT062450.2
ncRNA:24   UCUUCCCGUUUUGACUCGUUUUUU   1
  =|||||*|||||||||*|||||||
targets:428   GGAAGGACAAAACUGAACAAAAAA   451

2.5 Zea mays full-length cDNA clone ZM_BFb0299A08 mRNA, complete cds NA coding protein psRNATarget