Search result

BaseInfo

ncRNA ID	novel_zma_miR11899
Species	Zea mays
Class	miRNA
Genome position	Chr7:22886731-22886826 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	21
Mature sequence(if miRNA)	76 - UAUACUCGUUCCUUGUGUGCC - 96
Stem-loop(if miRNA)	--                          UCUCACA    AUAGACACCA   UAUACUCGUUCCUUGUGUGCCACUGG       UGUC          A   ||||||||||||||||||||||||||       ||||   AUAUGAGUAAGGAGCACAUGGUGACU       UAUA          A AA                          --CACCG    UCCAUAUAAA
Stem-loop sequence	UAUACUCGUUCCUUGUGUGCCACUGGUCUCACAUGUCAUAGACACCAAAAAAUAUACCUAUAUGCCACUCAGUGGUACACGAGGAAUGAGUAUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU967272.1	ncRNA:21   CCGUGUGUUCCUUGCUCAUAU   1   ||||=||||||||=||||||| targets:609   GGCAUACAAGGAAUGAGUAUA   629 Target Full Sequence	2.5	Zea mays clone 300934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU967272.1	ncRNA:21   CCGUGUGUUCCUUGCUCAUAU   1   ||||=||||||||=||||||| targets:639   GGCAUACAAGGAAUGAGUAUA   659 Target Full Sequence	2.5	Zea mays clone 300934 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU956996.1	ncRNA:21   CCGUGUGUUCCUUGCUCAUAU   1   ||||=||||||||=||||||| targets:1634   GGCAUACAAGGAAUGAGUAUA   1654 Target Full Sequence	2.5	Zea mays clone 1579828 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547541.1	ncRNA:21   CCGUGUGUUCCUUGCUCAUAU   1   *||||||||||||=||||||| targets:4307   AGCACACAAGGAAUGAGUAUA   4327 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC100273682 (LOC100273682), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU949300.1	ncRNA:21   CCGUGUGUUCCUUGCUCAUAU   1   |*=|||||||*|||||||||| targets:190   GAUACACAAGUAACGAGUAUA   210 Target Full Sequence	2.5	Zea mays clone 400899 mRNA sequence	NA	coding protein	psRNATarget