Search result

BaseInfo

ncRNA ID	novel_zma_miR11888
Species	Zea mays
Class	miRNA
Genome position	Chr7:103265913-103266121 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	186 - GUCAUGAUAUCAUGUGUAGAGGCU - 209
Stem-loop(if miRNA)	--                                     U    U    G      G      GA                        A     CA      CA   GUCAUGAUAUCAUGUGUAGAGGCUGUGAUAAAAAUUU AGAA GUUU GAGAAA UUGUGA  CACUAUGUGUAGAAACCUAAGAGA CUACA  UGAAAU  U   ||||||||||||||||||||||||||||||||||||| |||| |||| |||||| ||||||  |||||||||||||||||||||||| |||||  ||||||   CAGUACUAUAGUAUACAUCUCCGACACUAUUUUUAAA UUUU CAAA CUCUUU GACACU  GUGAUACACAUCUUUGGAUUCUCU GGUGU  ACUUUA  A CA                                     C    U    G      G      GC                        A     -A      AG
Stem-loop sequence	GUCAUGAUAUCAUGUGUAGAGGCUGUGAUAAAAAUUUUAGAAUGUUUGGAGAAAGUUGUGAGACACUAUGUGUAGAAACCUAAGAGAACUACACAUGAAAUCAUAGAAUUUCAAUGUGGAUCUCUUAGGUUUCUACACAUAGUGCGUCACAGGUUUCUCGAAACUUUUUCAAAUUUUUAUCACAGCCUCUACAUAUGAUAUCAUGACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ089840.1	ncRNA:24   UCGGAGAUGUGUACUAUAGUACUG   1   ||||||||||=|||||||||||=| targets:3   AGCCUCUACAUAUGAUAUCAUGGC   26 Target Full Sequence	2.5	TSA: Zea mays contig25486, mRNA sequence	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   UCGGAGAUGUGUACUAUAGUACUG   1   |*||||||=|=||||||||||||| targets:201   AACCUCUAUAUAUGAUAUCAUGAC   224 Target Full Sequence	2.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   UCGGAGAUGUGUACUAUAGUACUG   1   |*||||||=|=||||||||||||| targets:201   AACCUCUAUAUAUGAUAUCAUGAC   224 Target Full Sequence	2.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   UCGGAGAUGUGUACUAUAGUACUG   1   |*||||||=|=||||||||||||| targets:201   AACCUCUAUAUAUGAUAUCAUGAC   224 Target Full Sequence	2.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020546111.1	ncRNA:24   UCGGAGAUGUGUACUAUAGUACUG   1   ||=|*|||||=||||||||||||| targets:4026   AGUCGCUACAUAUGAUAUCAUGAC   4049 Target Full Sequence	1.0	PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   UCGGAGAUGUGUACUAUAGUACUG   1   |*|||*||||=||||||||||||| targets:201   AACCUGUACAUAUGAUAUCAUGAC   224 Target Full Sequence	2.0	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:24   UCGGAGAUGUGUACUAUAGUACUG   1   |*|||*||||=||||||||||||| targets:201   AACCUGUACAUAUGAUAUCAUGAC   224 Target Full Sequence	2.0	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
JB163681.1	ncRNA:24   UCGGAGAUGUGUACUAUAGUACUG   1   |*|||*||||=||||||||||||| targets:201   AACCUGUACAUAUGAUAUCAUGAC   224 Target Full Sequence	2.0	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget