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BaseInfo

ncRNA ID	novel_zma_miR11884
Species	Zea mays
Class	miRNA
Genome position	Chr7:109933042-109933165 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	21
Mature sequence(if miRNA)	104 - GGCACUCGGCAAAGUAGACUU - 124
Stem-loop(if miRNA)	--                  C   C                                -   U   GGCACUCGGCAAAGUAGA UUU CCGAGUGUCAGCUGGUUGACACUCGGUAAAGA UUC U   |||||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| U   CUGUGAGCUGUUUCAUCU AAA GGCUCACAGUCGACCAACUGUGAGCCGUUUCU AAG U UA                  A   C                                U   A
Stem-loop sequence	GGCACUCGGCAAAGUAGACUUUCCCGAGUGUCAGCUGGUUGACACUCGGUAAAGAUUCUUUUAGAAUUCUUUGCCGAGUGUCAACCAGCUGACACUCGGCAAAAUCUACUUUGUCGAGUGUCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ240695.1	ncRNA:21   UUCAGAUGAAACGGCUCACGG   1   |=|||*=|||||||||||||| targets:45   AGGUCGGCUUUGCCGAGUGCC   65 Target Full Sequence	2.0	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
JB169026.1	ncRNA:21   UUCAGAUGAAACGGCUCACGG   1   |=|||*=|||||||||||||| targets:45   AGGUCGGCUUUGCCGAGUGCC   65 Target Full Sequence	2.0	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
HI408565.1	ncRNA:21   UUCAGAUGAAACGGCUCACGG   1   |=|||*=|||||||||||||| targets:45   AGGUCGGCUUUGCCGAGUGCC   65 Target Full Sequence	2.0	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   UUCAGAUGAAACGGCUCACGG   1   |||*||*|||||||||||||| targets:11   AAGCCUUCUUUGCCGAGUGCC   31 Target Full Sequence	2.0	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
HI406962.1	ncRNA:21   UUCAGAUGAAACGGCUCACGG   1   =||*||*|||||||||||||| targets:14   GAGGCUUCUUUGCCGAGUGCC   34 Target Full Sequence	2.0	Sequence 5087 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239092.1	ncRNA:21   UUCAGAUGAAACGGCUCACGG   1   =||*||*|||||||||||||| targets:14   GAGGCUUCUUUGCCGAGUGCC   34 Target Full Sequence	2.0	Sequence 5087 from Patent EP2985353	NA	coding protein	psRNATarget
JB167423.1	ncRNA:21   UUCAGAUGAAACGGCUCACGG   1   =||*||*|||||||||||||| targets:14   GAGGCUUCUUUGCCGAGUGCC   34 Target Full Sequence	2.0	Sequence 5087 from Patent EP2559767	NA	coding protein	psRNATarget
EU962802.1	ncRNA:21   UUCAGAUGAAACGGCUCACGG   1   =||*||*|||||||||||||| targets:1097   GAGGCUUCUUUGCCGAGUGCC   1117 Target Full Sequence	2.0	Zea mays clone 245661 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget