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BaseInfo

ncRNA ID	novel_zma_miR11880
Species	Zea mays
Class	miRNA
Genome position	Chr7:130250835-130250960 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - GCGGACCGUCUGCGCCUGUGCAGA - 24
Stem-loop(if miRNA)	--      C        C     -GCC UA    G     CA G  GCC   ---A       AAC   UGCGCA GCGCGGAC GUCCG    C  GGGC CGGAC  U CG   GAC    GGCAGGG   C   |||||| |||||||| |||||    |  |||| |||||  | ||   |||    |||||||   C   ACGUGU CGCGUCUG CAGGC    G  CCCG GCCUG  A GC   CUG    UUGUCCC   A AG      C        C     GUAA UC    -     CC G  --A   AACC       CGA
Stem-loop sequence	UGCGCACGCGCGGACCGUCCGGCCCUAGGGCGCGGACCAUGCGGCCGACAGGCAGGGAACCCAAGCCCCUGUUCCAAGUCACGGACCGUCCGGCCCCUGAAUGCGGACCGUCUGCGCCUGUGCAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970066.1	ncRNA:24   AGACGUGUCCGCGUCUGCCAGGCG   1   ||||||||||*||=|||||||||| targets:825   UCUGCACAGGGGCGGACGGUCCGC   848 Target Full Sequence	2.5	Zea mays clone 339328 mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   AGACGUGUCCGCGUCUGCCAGGCG   1   ||||**|||||||=|||||||||| targets:182   UCUGGUCAGGCGCGGACGGUCCGC   205 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU968855.1	ncRNA:24   AGACGUGUCCGCGUCUGCCAGGCG   1   ||||**|||||||=|||||||||| targets:619   UCUGGUCAGGCGCGGACGGUCCGC   642 Target Full Sequence	2.5	Zea mays clone 324570 mRNA sequence	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   AGACGUGUCCGCGUCUGCCAGGCG   1   ||||**|||||||=|||||||||| targets:654   UCUGGUCAGGCGCGGACGGUCCGC   677 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   AGACGUGUCCGCGUCUGCCAGGCG   1   ||||**|||||||=|||||||||| targets:1672   UCUGGUCAGGCGCGGACGGUCCGC   1695 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   AGACGUGUCCGCGUCUGCCAGGCG   1   ||||**|||||||=|||||||||| targets:1672   UCUGGUCAGGCGCGGACGGUCCGC   1695 Target Full Sequence	2.5	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget