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BaseInfo

ncRNA ID	novel_zma_miR11873
Species	Zea mays
Class	miRNA
Genome position	Chr7:162903777-162903911 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	23
Mature sequence(if miRNA)	113 - UAGGGCUUGUUCGUUUUGGAGUG - 135
Stem-loop(if miRNA)	---U                                                               A     AGGGCUUGUUCGUUUUGGAGUGGAUUGAGGGGGAUUGGAGGGGAUUAAAUCCUCUCCUAUACA A     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     UCCCGAACAAGCAAAACUUCACCUAACUCCCCCUAACCUCCCCUAAUUUAGGGGAGGAUAUGU U GAAU                                                               U
Stem-loop sequence	UAGGGCUUGUUCGUUUUGGAGUGGAUUGAGGGGGAUUGGAGGGGAUUAAAUCCUCUCCUAUACAAAUUUGUAUAGGAGGGGAUUUAAUCCCCUCCAAUCCCCCUCAAUCCACUUCAAAACGAACAAGCCCUUAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067853.1	ncRNA:23   GUGAGGUUUUGCUUGUUCGGGAU   1   ||||||||||||||||||||||* targets:2216   CACUCCAAAACGAACAAGCCCUU   2238 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0172L19 mRNA, complete cds	NA	coding protein	psRNATarget
BT016657.1	ncRNA:23   GUGAGGUUUUGCUUGUUCGGGAU   1   ||||||||=||||||=||||||| targets:464   CACUCCAAGACGAACGAGCCCUA   486 Target Full Sequence	2.5	Zea mays clone Contig490 mRNA sequence	NA	coding protein	psRNATarget
XM_008671918.2	ncRNA:20   AGGUUUUGCUUGUUCGGGAU   1   ||||||=||||||||||||| targets:1   UCCAAAGCGAACAAGCCCUA   20 Target Full Sequence	1.0	PREDICTED: Zea mays probable WRKY transcription factor 53 (LOC103647375), mRNA	NA	coding protein	psRNATarget
BT039068.1	ncRNA:23   GUGAGGUUUUGCUUGUUCGGGAU   1   *=*|||||||||||||||||||* targets:1212   GGAUCCAAAACGAACAAGCCCUU   1234 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0368C07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148364.1	ncRNA:23   GUGAGGUUUUGCUUGUUCGGGAU   1   *=*|||||||||||||||||||* targets:1353   GGAUCCAAAACGAACAAGCCCUU   1375 Target Full Sequence	1.0	Zea mays DNA replication licensing factor MCM7 (cl18116_1), mRNA	NA	coding protein	psRNATarget
BT042142.1	ncRNA:23   GUGAGGUUUUGCUUGUUCGGGAU   1   *=*|||||||||||||||||||* targets:1353   GGAUCCAAAACGAACAAGCCCUU   1375 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0145P12 mRNA, complete cds	NA	coding protein	psRNATarget
BT054737.1	ncRNA:23   GUGAGGUUUUGCUUGUUCGGGAU   1   |*||=||||*||||||||||||| targets:213   CCCUUCAAACCGAACAAGCCCUA   235 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
EU968162.1	ncRNA:23   GUGAGGUUUUGCUUGUUCGGGAU   1   |*||=||||*||||||||||||= targets:252   CCCUUCAAACCGAACAAGCCCUG   274 Target Full Sequence	3.0	Zea mays clone 315798 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:23   GUGAGGUUUUGCUUGUUCGGGAU   1   *|***|||||||||||||||||| targets:1840   GAGAGCAAAACGAACAAGCCCUA   1862 Target Full Sequence	1.0	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:23   GUGAGGUUUUGCUUGUUCGGGAU   1   *|***|||||||||||||||||| targets:1856   GAGAGCAAAACGAACAAGCCCUA   1878 Target Full Sequence	1.0	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008660174.2	ncRNA:23   GUGAGGUUUUGCUUGUUCGGGAU   1   *|***|||||||||||||||||* targets:3621   AAGAGCAAAACGAACAAGCCCUU   3643 Target Full Sequence	2.0	PREDICTED: Zea mays Protein CHAPERONE-LIKE PROTEIN OF POR1 chloroplastic (LOC100276880), transcript variant X2, mRNA	NA	coding protein	psRNATarget