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BaseInfo

ncRNA ID	novel_zma_miR11867
Species	Zea mays
Class	miRNA
Genome position	Chr7:160791339-160791453 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	92 - AAAAUAUAAUAAAAUGUAGGGACU - 115
Stem-loop(if miRNA)	--    GU         U         CC         C     CG    A         UCUC  UAUUUUAUU UAUUUUAGU  CUAAAUUAC AAAUA  AAAA UAAAAUA   ||||  ||||||||| |||||||||  ||||||||| |||||  |||| ||||||G   AGGG  GUAAAAUAA AUAAAAUUA  GAUUUAAUG UUUAU  UUUU AUUUUGA UC    AU         U         UA         A     AU    A
Stem-loop sequence	UCUCGUUAUUUUAUUUUAUUUUAGUCCCUAAAUUACCAAAUACGAAAAAUAAAAUAGAGUUUUAAUUUUUAUAUUUAGUAAUUUAGAUAUUAAAAUAUAAUAAAAUGUAGGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU956677.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||||||||||||*|||||| targets:2039   AGUCCCUACAUUUUAUUUUAUUUU   2062 Target Full Sequence	1.5	Zea mays clone 1570443 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||||||||||||*|||||| targets:1571   AGUCCCUACAUUUUAUUCUAUUUU   1594 Target Full Sequence	1.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
NM_001112512.2	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||*|||||||||*|||||| targets:1668   AGUCCCUUCAUUUUAUUCUAUUUU   1691 Target Full Sequence	2.5	Zea mays Aldose reductase (pco147797a), mRNA	NA	coding protein	psRNATarget
EZ060524.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||||||||||||*|||||| targets:71   AGUCCCUACAUUUUAUUCUAUUUU   94 Target Full Sequence	1.5	TSA: Zea mays contig61646, mRNA sequence	NA	coding protein	psRNATarget
XM_008667360.2	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   ||||||||=||||||||*|||||| targets:1068   AGUCCCUAUAUUUUAUUCUAUUUU   1091 Target Full Sequence	2.5	PREDICTED: Zea mays GNAT transcription factor (LOC103644167), mRNA	NA	coding protein	psRNATarget
JB163456.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||||||||||||*|||||* targets:31   AGUCCCUACAUUUUAUUUUAUUUA   54 Target Full Sequence	2.5	Sequence 1120 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235125.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||||||||||||*|||||* targets:31   AGUCCCUACAUUUUAUUUUAUUUA   54 Target Full Sequence	2.5	Sequence 1120 from Patent EP2985353	NA	coding protein	psRNATarget
HI402995.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||||||||||||*|||||* targets:31   AGUCCCUACAUUUUAUUUUAUUUA   54 Target Full Sequence	2.5	Sequence 1120 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001153051.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||*|||||||||*|||||| targets:814   AGUCCCUUCAUUUUAUUUUAUUUU   837 Target Full Sequence	2.5	Zea mays NAD(P)-binding Rossmann-fold superfamily protein (LOC100280114), mRNA	NA	coding protein	psRNATarget
BT055601.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||*|||||||||*|||||| targets:814   AGUCCCUUCAUUUUAUUUUAUUUU   837 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0063A22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008680551.2	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||*|||||||||*|||||| targets:838   AGUCCCUUCAUUUUAUUCUAUUUU   861 Target Full Sequence	2.5	PREDICTED: Zea mays Plant-specific domain TIGR01589 family protein (pco120805), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI403055.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||*|||||||||*|||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1180 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235185.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||*|||||||||*|||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1180 from Patent EP2985353	NA	coding protein	psRNATarget
JB163516.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||*|||||||||*|||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1180 from Patent EP2559767	NA	coding protein	psRNATarget
HI403050.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||*|||||||||*|||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1175 from Patent EP2074227	NA	coding protein	psRNATarget
JB163511.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||*|||||||||*|||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1175 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235180.1	ncRNA:24   UCAGGGAUGUAAAAUAAUAUAAAA   1   |||||||*|||||||||*|||||| targets:29   AGUCCCUUCAUUUUAUUCUAUUUU   52 Target Full Sequence	2.5	Sequence 1175 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008657966.2	ncRNA:20   GGAUGUAAAAUAAUAUAAAA   1   |||||||||||||*|||||| targets:1   CCUACAUUUUAUUCUAUUUU   20 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103635535 (LOC103635535), transcript variant X1, mRNA	NA	coding protein	psRNATarget