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BaseInfo

ncRNA ID	novel_zma_miR11866
Species	Zea mays
Class	miRNA
Genome position	Chr7:159504426-159504573 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	125 - UGUAGAUUGCACUGUUUGUAGAGU - 148
Stem-loop(if miRNA)	--          AUA                        -AAA               C         AACUAU   UCUACAAACA   CAAUUUAUAGUGCAAAACGGUGCA    GGUGUUUUUGGUGAC AUAUGGGUG      U   ||||||||||   ||||||||||||||||||||||||    ||||||||||||||| |||||||||      A   AGAUGUUUGU   GUUAGAUGUUAUGUUUUGCUACGU    UCACAAAAAUCACUG UAUAUCCAC      U UG          CAC                        CUUG               A         AUCACA
Stem-loop sequence	UCUACAAACAAUACAAUUUAUAGUGCAAAACGGUGCAAAAGGUGUUUUUGGUGACCAUAUGGGUGAACUAUUAUACACUACACCUAUAUAGUCACUAAAAACACUGUUCUGCAUCGUUUUGUAUUGUAGAUUGCACUGUUUGUAGAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU973003.1	ncRNA:24   UGAGAUGUUUGUCACGUUAGAUGU   1   ||||||=||||||||||||||||| targets:1077   ACUCUAUAAACAGUGCAAUCUACA   1100 Target Full Sequence	1.0	Zea mays clone 391534 DNA-3-methyladenine glycosylase 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001158478.1	ncRNA:24   UGAGAUGUUUGUCACGUUAGAUGU   1   ||||||=||||||||||||||||| targets:1077   ACUCUAUAAACAGUGCAAUCUACA   1100 Target Full Sequence	1.0	Zea mays DNA-3-methyladenine glycosylase 1 (LOC100285587), mRNA	NA	coding protein	psRNATarget
XM_020550050.1	ncRNA:24   UGAGAUGUUUGUCACGUUAGAUGU   1   |||||=|||||||||||||||||| targets:1063   ACUCUGCAAACAGUGCAAUCUACA   1086 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC541932 (umc1540), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001154344.1	ncRNA:24   UGAGAUGUUUGUCACGUUAGAUGU   1   |||||==||||||||||||||||| targets:464   ACUCUGUAAACAGUGCAAUCUACA   487 Target Full Sequence	2.0	Zea mays WRKY22 - superfamily of TFs having WRKY and zinc finger domains (LOC100281426), mRNA	NA	coding protein	psRNATarget
EU956670.1	ncRNA:24   UGAGAUGUUUGUCACGUUAGAUGU   1   |||||==||||||||||||||||| targets:464   ACUCUGUAAACAGUGCAAUCUACA   487 Target Full Sequence	2.0	Zea mays clone 1570252 WRKY22 - superfamily of TFs having WRKY and zinc finger domains mRNA, complete cds	NA	coding protein	psRNATarget
EU947328.1	ncRNA:24   UGAGAUGUUUGUCACGUUAGAUGU   1   ||||||=||||||||||=|||||| targets:121   ACUCUAUAAACAGUGCAGUCUACA   144 Target Full Sequence	2.5	Zea mays clone 339227 mRNA sequence	NA	coding protein	psRNATarget
EZ058715.1	ncRNA:24   UG--AGAUGUUUGUCACGUUAGAUGU   1   ||--|=||=|||||*||||||||||| targets:28   ACAAUUUAUAAACAAUGCAAUCUACA   53 Target Full Sequence	2.5	TSA: Zea mays contig59837, mRNA sequence	NA	coding protein	psRNATarget
BT016910.1	ncRNA:24   UG--AGAUGUUUGUCACGUUAGAUGU   1   ||--|=||=|||||*||||||||||| targets:80   ACAAUUUAUAAACAAUGCAAUCUACA   105 Target Full Sequence	2.5	Zea mays clone Contig743 mRNA sequence	NA	coding protein	psRNATarget
BT016910.1	ncRNA:24   UG--AGAUGUUUGUCACGUUAGAUGU   1   ||--|=||=|||||||*||||||||| targets:122   ACAAUUUAUAAACAGUACAAUCUACA   147 Target Full Sequence	2.5	Zea mays clone Contig743 mRNA sequence	NA	coding protein	psRNATarget