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BaseInfo

ncRNA ID	novel_zma_miR11865
Species	Zea mays
Class	miRNA
Genome position	Chr7:159158330-159158428 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AUUUAAUACUCCCUCCGUUUCUUU - 24
Stem-loop(if miRNA)	---AU                                          CAA      UUAAUACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUG   U      ||||||||||||||||||||||||||||||||||||||||||      AAUUAUGAGGGAGGCAAAGAAAAAUAAACAGCGACCUAUCAC   U UAUAC                                          AUU
Stem-loop sequence	AUUUAAUACUCCCUCCGUUUCUUUUUAUUUGUCGCUGGAUAGUGCAAUUUUACACUAUCCAGCGACAAAUAAAAAGAAACGGAGGGAGUAUUAACAUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235486.1	ncRNA:24   UUUCUUUGCCUCCCUCAUAAUUUA   1   *|||=|||||||||||||*||||| targets:77   UAAGGAACGGAGGGAGUACUAAAU   100 Target Full Sequence	1.5	Sequence 1481 from Patent EP2985353	NA	coding protein	psRNATarget
HI403356.1	ncRNA:24   UUUCUUUGCCUCCCUCAUAAUUUA   1   *|||=|||||||||||||*||||| targets:77   UAAGGAACGGAGGGAGUACUAAAU   100 Target Full Sequence	1.5	Sequence 1481 from Patent EP2074227	NA	coding protein	psRNATarget
JB163817.1	ncRNA:24   UUUCUUUGCCUCCCUCAUAAUUUA   1   *|||=|||||||||||||*||||| targets:77   UAAGGAACGGAGGGAGUACUAAAU   100 Target Full Sequence	1.5	Sequence 1481 from Patent EP2559767	NA	coding protein	psRNATarget
AY104299.1	ncRNA:24   UUUCUUUGCCUCCCUCAUAAUUUA   1   |||*||||||||||||||||*||| targets:1331   AAAAAAACGGAGGGAGUAUUCAAU   1354 Target Full Sequence	1.5	Zea mays PCO075569 mRNA sequence	NA	coding protein	psRNATarget
EZ088948.1	ncRNA:24   UUUC---UUUGCCUCCCUCAUAAUUUA   1   =|=|---|==|*||||||||||||||| targets:1   GAGGUUCAGGCAGAGGGAGUAUUAAAU   27 Target Full Sequence	3.0	TSA: Zea mays contig24594, mRNA sequence	NA	coding protein	psRNATarget
BT036890.1	ncRNA:24   UUUC---UUUGCCUCCCUCAUAAUUUA   1   =|=|---|==|*||||||||||||||| targets:61   GAGGUUCAGGCAGAGGGAGUAUUAAAU   87 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0146D14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001139398.1	ncRNA:24   UUUC---UUUGCCUCCCUCAUAAUUUA   1   =|=|---|==|*||||||||||||||| targets:61   GAGGUUCAGGCAGAGGGAGUAUUAAAU   87 Target Full Sequence	3.0	Zea mays Histone-lysine N-methyltransferase ATXR3 (LOC100194363), mRNA	NA	coding protein	psRNATarget
AY103869.1	ncRNA:24   UUUC---UUUGCCUCCCUCAUAAUUUA   1   =|=|---|==|*||||||||||||||| targets:54   GAGGUUCAGGCAGAGGGAGUAUUAAAU   80 Target Full Sequence	3.0	Zea mays PCO114486 mRNA sequence	NA	coding protein	psRNATarget
XM_008663256.2	ncRNA:24   UUUC---UUUGCCUCCCUCAUAAUUUA   1   =|=|---|==|*||||||||||||||| targets:6318   GAGGUUCAGGCAGAGGGAGUAUUAAAU   6344 Target Full Sequence	3.0	PREDICTED: Zea mays Histone-lysine N-methyltransferase ATXR3 (LOC100194363), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008663255.2	ncRNA:24   UUUC---UUUGCCUCCCUCAUAAUUUA   1   =|=|---|==|*||||||||||||||| targets:6324   GAGGUUCAGGCAGAGGGAGUAUUAAAU   6350 Target Full Sequence	3.0	PREDICTED: Zea mays Histone-lysine N-methyltransferase ATXR3 (LOC100194363), transcript variant X1, mRNA	NA	coding protein	psRNATarget