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BaseInfo

ncRNA ID	novel_zma_miR11854
Species	Zea mays
Class	miRNA
Genome position	Chr7:112043766-112043841 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	53 - AUCGAGUGCCAGAUCGCGGGCACU - 76
Stem-loop(if miRNA)	--                    GC    --UU      A   UGCCCGCGAUUUGGCACUCG  AAAG    UUUUAA A   ||||||||||||||||||||  ||||    ||||||   ACGGGCGCUAGACCGUGAGC  UUUU    AAAAUU U UC                    UA    UUAU      U
Stem-loop sequence	UGCCCGCGAUUUGGCACUCGGCAAAGUUUUUUAAAAUUUUAAAAUAUUUUUUAUCGAGUGCCAGAUCGCGGGCACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406093.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:91   AGUGCCCGCAAUCUGGCACUCGAC   114 Target Full Sequence	2.0	Sequence 4218 from Patent EP2074227	NA	coding protein	psRNATarget
JB166554.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:91   AGUGCCCGCAAUCUGGCACUCGAC   114 Target Full Sequence	2.0	Sequence 4218 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238223.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:91   AGUGCCCGCAAUCUGGCACUCGAC   114 Target Full Sequence	2.0	Sequence 4218 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001175465.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:913   AGUGCCCGCAAUCUGGCACUCGAC   936 Target Full Sequence	2.0	Zea mays uncharacterized LOC100382749 (LOC100382749), mRNA	NA	coding protein	psRNATarget
BT065228.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:913   AGUGCCCGCAAUCUGGCACUCGAC   936 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0048M05 mRNA, complete cds	NA	coding protein	psRNATarget
EU942429.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:924   AGUGCCCGCAAUCUGGCACUCGAC   947 Target Full Sequence	2.0	Zea mays clone 1497931 mRNA sequence	NA	coding protein	psRNATarget
XM_008673932.2	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:1332   AGUGCCCGCAAUCUGGCACUCGAC   1355 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008673931.2	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:1336   AGUGCCCGCAAUCUGGCACUCGAC   1359 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_020549486.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:1411   AGUGCCCGCAAUCUGGCACUCGAC   1434 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020549484.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:1416   AGUGCCCGCAAUCUGGCACUCGAC   1439 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549487.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:1416   AGUGCCCGCAAUCUGGCACUCGAC   1439 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008673929.2	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:1421   AGUGCCCGCAAUCUGGCACUCGAC   1444 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549485.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:1462   AGUGCCCGCAAUCUGGCACUCGAC   1485 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008673925.2	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:1545   AGUGCCCGCAAUCUGGCACUCGAC   1568 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100193680 (LOC100193680), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU943138.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:1807   AGUGCCCGCAAUCUGGCACUCGAC   1830 Target Full Sequence	2.0	Zea mays clone 1567640 mRNA sequence	NA	coding protein	psRNATarget
NM_001138773.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:1796   AGUGCCCGCAAUCUGGCACUCGAC   1819 Target Full Sequence	2.0	Zea mays uncharacterized LOC100193680 (LOC100193680), mRNA	NA	coding protein	psRNATarget
BT036012.1	ncRNA:24   UCACGGGCGCUAGACCGUGAGCUA   1   |||||||||*|||||||||||||* targets:1796   AGUGCCCGCAAUCUGGCACUCGAC   1819 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0091N21 mRNA, complete cds	NA	coding protein	psRNATarget