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BaseInfo

ncRNA ID	novel_zma_miR11853
Species	Zea mays
Class	miRNA
Genome position	Chr7:109959201-109959252 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	29 - AGACACUCGGCAAAGACUCCGUCU - 52
Stem-loop(if miRNA)	--     U             -   U   GCGGA UCUUUGCCGAGUG CUG C   ||||| ||||||||||||| ||| A   UGCCU AGAAACGGCUCAC GAC G UC     C             A   A
Stem-loop sequence	GCGGAUUCUUUGCCGAGUGCUGUCAGACAGACACUCGGCAAAGACUCCGUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238769.1	ncRNA:24   UCUGCCUCAGAAACGGCUCACAGA   1   |||=|||||||||||||||||||* targets:13   AGAUGGAGUCUUUGCCGAGUGUCC   36 Target Full Sequence	1.0	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
HI406639.1	ncRNA:24   UCUGCCUCAGAAACGGCUCACAGA   1   |||=|||||||||||||||||||* targets:13   AGAUGGAGUCUUUGCCGAGUGUCC   36 Target Full Sequence	1.0	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
JB167100.1	ncRNA:24   UCUGCCUCAGAAACGGCUCACAGA   1   |||=|||||||||||||||||||* targets:13   AGAUGGAGUCUUUGCCGAGUGUCC   36 Target Full Sequence	1.0	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
HI406725.1	ncRNA:22   UGCCUCAGAAACGGCUCACAGA   1   |=||||*||||||||||||||* targets:1   AUGGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	2.0	Sequence 4850 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238855.1	ncRNA:22   UGCCUCAGAAACGGCUCACAGA   1   |=||||*||||||||||||||* targets:1   AUGGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	2.0	Sequence 4850 from Patent EP2985353	NA	coding protein	psRNATarget
JB167186.1	ncRNA:22   UGCCUCAGAAACGGCUCACAGA   1   |=||||*||||||||||||||* targets:1   AUGGAGCCUUUGCCGAGUGUCA   22 Target Full Sequence	2.0	Sequence 4850 from Patent EP2559767	NA	coding protein	psRNATarget
EZ114211.1	ncRNA:24   UCUGCCUCAGAAACGGCUCACAGA   1   **||*|||||||||||||||||=* targets:327   CUACCGAGUCUUUGCCGAGUGUUG   350 Target Full Sequence	2.5	TSA: Zea mays contig49872, mRNA sequence	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   UCU--GCCUCAGAAACGGCUCACAGA   1   =||--||*=*|||||||||||||||| targets:499   GGAAUCGCGUUCUUUGCCGAGUGUCU   524 Target Full Sequence	3.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:24   UCU--GCCUCAGAAACGGCUCACAGA   1   =||--||*=*|||||||||||||||| targets:799   GGAAUCGUGUUCUUUGCCGAGUGUCU   824 Target Full Sequence	3.0	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:24   UCU--GCCUCAGAAACGGCUCACAGA   1   =||--||*=*|||||||||||||||| targets:799   GGAAUCGUGUUCUUUGCCGAGUGUCU   824 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   UCUGCCUC-AGAAACGGCUCACAGA   1   =*|**|||-|||||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	3.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   UCUGCCUC-AGAAACGGCUCACAGA   1   =*|**|||-|||||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	3.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
HI406693.1	ncRNA:24   UCUGCCUC-AGAAACGGCUCACAGA   1   =*|**|||-|||||||||||||||* targets:60   GCAAAGAGCUCUUUGCCGAGUGUCA   84 Target Full Sequence	3.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008676330.2	ncRNA:24   UCU--GCCUCAGAAACGGCUCACAGA   1   =||--|*|||*|||||||||||||*| targets:1694   GGAAUCCGAGGCUUUGCCGAGUGUGU   1719 Target Full Sequence	2.5	PREDICTED: Zea mays amino-acid permease BAT1 homolog (LOC103650760), mRNA	NA	coding protein	psRNATarget