Search result

BaseInfo

ncRNA ID	novel_zma_miR11847
Species	Zea mays
Class	miRNA
Genome position	Chr6:79010476-79010611 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	21
Mature sequence(if miRNA)	116 - UUCACAAGCGGUUUUUGAUUG - 136
Stem-loop(if miRNA)	--            C     UGUGU   UA     -----A    -    -GAU   A              UG   AUUAAAAACCGC UGUGA     GGC  ACACA      GCGG CUAG    AAG AACCGCCUGUGAUG  U   |||||||||||| |||||     |||  |||||      |||| ||||    ||| ||||||||||||||   UAGUUUUUGGCG ACACU     CUG  UGUGU      CGCC GGUC    UUC UUGGCGGACACUAU  G GU            A     ---UU   --     AAUGUC    A    AAGU   C              CU
Stem-loop sequence	AUUAAAAACCGCCUGUGAUGUGUGGCUAACACAAGCGGCUAGGAUAAGAAACCGCCUGUGAUGUGUGUCUAUCACAGGCGGUUCCUUUGAACUGGACCGCCUGUAAUGUGUGUCUUUCACAAGCGGUUUUUGAUUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
NM_001346990.1	ncRNA:21   GUUAGUUUUUGGCGAACACUU   1   ||||||||||||||*|||||| targets:1331   CAAUCAAAAACCGCCUGUGAA   1351 Target Full Sequence	1.5	Zea mays WAT1-related protein (LOC100304260), transcript variant 2, mRNA	NA	coding protein	psRNATarget
XM_008683066.2	ncRNA:21   GUUAGUUUUUGGCGAACACUU   1   ||||||||||||||*|||||| targets:1401   CAAUCAAAAACCGCCUGUGAA   1421 Target Full Sequence	1.5	PREDICTED: Zea mays WAT1-related protein (LOC100304260), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT068055.1	ncRNA:21   GUUAGUUUUUGGCGAACACUU   1   ||||||||||||||*|||||| targets:1466   CAAUCAAAAACCGCCUGUGAA   1486 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0031N10 mRNA, complete cds	NA	coding protein	psRNATarget
BT086495.1	ncRNA:21   GUUAGUUUUUGGCGAACACUU   1   ||||||||||||||*|||||| targets:1540   CAAUCAAAAACCGCCUGUGAA   1560 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172L11 mRNA, complete cds	NA	coding protein	psRNATarget