Search result

BaseInfo

ncRNA ID	novel_zma_miR11846
Species	Zea mays
Class	miRNA
Genome position	Chr6:76678363-76678471 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - GCGGACUGUCCGCGACCUGGGGCC - 24
Stem-loop(if miRNA)	--            C -A  UG    -     GA   GU    U GUG  C   U       GCGGACUGUCCG G  CC  GGGC CGGAC  UCC  GGCC G   CG GGC AGGGC   |||||||||||| |  ||  |||| |||||  |||  |||| |   || ||| ||||U   CGCCUGGCAGGC C  GG  CCCG GCCUG  AGG  CCGG C   GU CCG UCUCU CG            - GG  GU    C     GC   --    - --A  -   -
Stem-loop sequence	GCGGACUGUCCGCGACCUGGGGCCGGACGAUCCGUGGCCUGGUGCGCGGCUAGGGCUUCUCUGCCUGACGGCCGGACGGUCCGCGCCCUGGGGGCCGGACGGUCCGCGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020539115.1	ncRNA:24   CCGGGGUCCAGCGCCUGUCAGGCG   1   |||||||||*|||||||||||||| targets:2704   GGCCCCAGGCCGCGGACAGUCCGC   2727 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   CCGGGGUCCAGCGCCUGUCAGGCG   1   ||||=||||*|||||||||||||| targets:1261   GGCCUCAGGCCGCGGACAGUCCGC   1284 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   CCGGGGUCCAGCGCCUGUCAGGCG   1   ||||=||||*|||||||||||||| targets:1261   GGCCUCAGGCCGCGGACAGUCCGC   1284 Target Full Sequence	1.0	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
EZ073491.1	ncRNA:24   CCGGGGUCCAGCGCCUGUCAGGCG   1   |||||||||*|||||||*|||||| targets:87   GGCCCCAGGCCGCGGACCGUCCGC   110 Target Full Sequence	2.5	TSA: Zea mays contig09128, mRNA sequence	NA	coding protein	psRNATarget