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BaseInfo

ncRNA ID novel_zma_miR11843
Species Zea mays
Class miRNA
Genome position Chr6:72183200-72183256 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 23
Mature sequence(if miRNA) 35 - CAUUGGCCAUGAUCUAUUUGACU - 57
Stem-loop(if miRNA) --     UU             -  UCUUA
  UCAAA  UAGGUUAUGGCCA UG     U
  |||||  ||||||||||||| ||
  AGUUU  AUCUAGUACCGGU AC     U
UC     --             U  UAUGC
Stem-loop sequence UCAAAUUUAGGUUAUGGCCAUGUCUUAUUCGUAUCAUUGGCCAUGAUCUAUUUGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT018696.1
ncRNA:23   UC-AGUUUAUCUAGUACCGGUUAC   1
  ||-|*||=*|||||||||||||||
targets:907   AGAUGAAGAAGAUCAUGGCCAAUG   930

2.0 Zea mays clone EL01N0513E06.d mRNA sequence NA coding protein psRNATarget
XM_008654730.2
ncRNA:23   UC-AGUUUAUCUAGUACCGGUUAC   1
  ||-|*||=*|||||||||||||||
targets:1120   AGAUGAAGAAGAUCAUGGCCAAUG   1143

2.0 PREDICTED: Zea mays transcription factor RF2a (LOC103633044), mRNA NA coding protein psRNATarget