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BaseInfo

ncRNA ID	novel_zma_miR11828
Species	Zea mays
Class	miRNA
Genome position	Chr9:130136533-130136628 [-]
Reference genome	RefGen_v4
Source	SRR1997865
Length	23
Mature sequence(if miRNA)	74 - UGACAAGGGGAUCACGGGGGAUU - 96
Stem-loop(if miRNA)	--    AA          -              G    GG        GA   UGAC  GGGGAUCACG GGGGAUUGGAGGGG UUGA  GGGGAAAU  A   ||||  |||||||||| |||||||||||||| ||||  ||||||||   ACUG  UCUCUAGUGC CUCCUAACCUCCCU AACU  CCCUUUUA  C CC    -G          A              -    -A        AU
Stem-loop sequence	UGACAAGGGGAUCACGGGGGAUUGGAGGGGGUUGAGGGGGGAAAUGAACUAAUUUUCCCAUCAAUCCCUCCAAUCCUCACGUGAUCUCUGGUCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ106816.1	ncRNA:23   UUAGG-GGGCACUAGGGGAACAGU   1   |||||-|||||||||||||||||| targets:289   AAUCCUCCCGUGAUCCCCUUGUCA   312 Target Full Sequence	2.0	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget
EU945995.1	ncRNA:23   UUAGGG-GGCACUAGGGGAACAGU   1   ||||||-||||||||||||||||| targets:392   AAUCCCUCCGUGAUCCCCUUGUCA   415 Target Full Sequence	2.0	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
XM_008649581.2	ncRNA:23   UUAGGG-GGCACUAGGGGAACAGU   1   ||||||-||||||||||||||||= targets:1816   AAUCCCUCCGUGAUCCCCUUGUCG   1839 Target Full Sequence	3.0	PREDICTED: Zea mays pentatricopeptide repeat protein (LOC100527940), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:23   UUAGG-GGGCACUAGGGGAACAGU   1   |||||-||||*||||||||||||| targets:85   AAUCCUCCCGGGAUCCCCUUGUCA   108 Target Full Sequence	3.0	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
JB170124.1	ncRNA:23   UUAGG-GGGCACUAGGGGAACAGU   1   |||||-||||*||||||||||||| targets:85   AAUCCUCCCGGGAUCCCCUUGUCA   108 Target Full Sequence	3.0	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
HI409663.1	ncRNA:23   UUAGG-GGGCACUAGGGGAACAGU   1   |||||-||||*||||||||||||| targets:85   AAUCCUCCCGGGAUCCCCUUGUCA   108 Target Full Sequence	3.0	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
EU961132.1	ncRNA:23   UUAGG-GGGCACUAGGGGAACAGU   1   |||||-||||*||||||||||||| targets:839   AAUCCUCCCGGGAUCCCCUUGUCA   862 Target Full Sequence	3.0	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:23   UUAGG-GGGCACUAGGGGAACAGU   1   |||||-||||*||||||||||||| targets:878   AAUCCUCCCGGGAUCCCCUUGUCA   901 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:23   UUAGG-GGGCACUAGGGGAACAGU   1   |||||-||||*||||||||||||| targets:883   AAUCCUCCCGGGAUCCCCUUGUCA   906 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:23   UUAGG-GGGCACUAGGGGAACAGU   1   |||||-||||*||||||||||||| targets:883   AAUCCUCCCGGGAUCCCCUUGUCA   906 Target Full Sequence	3.0	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
EU953234.1	ncRNA:23   UUAGG-GGGCACUAGGGGAACAGU   1   |||||-||||*||||||||||||| targets:1488   AAUCCUCCCGGGAUCCCCUUGUCA   1511 Target Full Sequence	3.0	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
EU960973.1	ncRNA:23   UUAGGGGGCACUAGGGGAACAGU   1   *|*||||||*|||||||||*||| targets:103   CAGCCCCCGCGAUCCCCUUCUCA   125 Target Full Sequence	2.5	Zea mays clone 230080 mRNA sequence	NA	coding protein	psRNATarget