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BaseInfo

ncRNA ID	novel_zma_miR11824
Species	Zea mays
Class	miRNA
Genome position	Chr6:89089924-89090016 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	70 - AAGGGCUUGUUCGCUUUGGAGUGG - 93
Stem-loop(if miRNA)	--A                                         GG    AGGGCUUGUUCGCUUUGGAGUGGAUUGAGGGGGAUUGGAGG  A    |||||||||||||||||||||||||||||||||||||||||  U    UCCCGAACAAGCGAAACCUCACCUAACUCCCCCUAACCUCC  U AAA                                         AA
Stem-loop sequence	AAGGGCUUGUUCGCUUUGGAGUGGAUUGAGGGGGAUUGGAGGGGAUUAACCUCCAAUCCCCCUCAAUCCACUCCAAAGCGAACAAGCCCUAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT067853.1	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   ||||||||||*||||||||||||| targets:2215   CCACUCCAAAACGAACAAGCCCUU   2238 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0172L19 mRNA, complete cds	NA	coding protein	psRNATarget
BT054119.1	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   |||||=|*||*||||||||||||| targets:464   CCACUUCUAACCGAACAAGCCCUU   487 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0117A22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008671918.2	ncRNA:20   AGGUUUCGCUUGUUCGGGAA   1   |||||||||||||||||||* targets:1   UCCAAAGCGAACAAGCCCUA   20 Target Full Sequence	1.0	PREDICTED: Zea mays probable WRKY transcription factor 53 (LOC103647375), mRNA	NA	coding protein	psRNATarget
EU968162.1	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   ||*||=||||*||||||||||||* targets:251   CCCCUUCAAACCGAACAAGCCCUG   274 Target Full Sequence	3.0	Zea mays clone 315798 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT054737.1	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   ||*||=||||*||||||||||||* targets:212   CCCCUUCAAACCGAACAAGCCCUA   235 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0011M02 mRNA, complete cds	NA	coding protein	psRNATarget
EZ107077.1	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   ||||*||*||*||||||||||||| targets:144   CCACACCUAACCGAACAAGCCCUU   167 Target Full Sequence	2.0	TSA: Zea mays contig42735, mRNA sequence	NA	coding protein	psRNATarget
EU942133.1	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   ||||*||*||*||||||||||||| targets:214   CCACACCUAACCGAACAAGCCCUU   237 Target Full Sequence	2.0	Zea mays clone 1476690 mRNA sequence	NA	coding protein	psRNATarget
EU941788.1	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   ||||*||*||*||||||||||||| targets:204   CCACACCUAACCGAACAAGCCCUU   227 Target Full Sequence	2.0	Zea mays clone 1470119 mRNA sequence	NA	coding protein	psRNATarget
BT055357.1	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   ||||*||*||*||||||||||||| targets:429   CCACGCCUAACCGAACAAGCCCUU   452 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0070A22 mRNA, complete cds	NA	coding protein	psRNATarget
AY103783.2	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   ||||*||*||*||||||||||||| targets:789   CCACGCCUAACCGAACAAGCCCUU   812 Target Full Sequence	2.0	Zea mays PCO084580 mRNA sequence	NA	coding protein	psRNATarget
BT039068.1	ncRNA:24   GG--UG----AGGUUUCGCUUGUUCGGGAA   1   ||--||----||||||*||||||||||||| targets:1205   CCUAACAGGAUCCAAAACGAACAAGCCCUU   1234 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0368C07 mRNA, complete cds	NA	coding protein	psRNATarget
BT042142.1	ncRNA:24   GG--UG----AGGUUUCGCUUGUUCGGGAA   1   ||--||----||||||*||||||||||||| targets:1346   CCUAACAGGAUCCAAAACGAACAAGCCCUU   1375 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0145P12 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148364.1	ncRNA:24   GG--UG----AGGUUUCGCUUGUUCGGGAA   1   ||--||----||||||*||||||||||||| targets:1346   CCUAACAGGAUCCAAAACGAACAAGCCCUU   1375 Target Full Sequence	1.0	Zea mays DNA replication licensing factor MCM7 (cl18116_1), mRNA	NA	coding protein	psRNATarget
BT069589.2	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   |||=|*|*||*||||||||||||| targets:1044   CCAUUACUAACCGAACAAGCCCUU   1067 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0174I14 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020550140.1	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   |||=*||*||*||||||||||||| targets:3607   CCAUCCCUAACCGAACAAGCCCUU   3630 Target Full Sequence	2.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008675573.2	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   |||=*||*||*||||||||||||| targets:3607   CCAUCCCUAACCGAACAAGCCCUU   3630 Target Full Sequence	2.0	PREDICTED: Zea mays rust resistance kinase Lr10 (LOC103649884), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020552749.1	ncRNA:24   GGUGAGGUUUCGCUUGUUCGGGAA   1   ||||*||*||*||||||||||||* targets:3294   CCACCCCUAACCGAACAAGCCCUC   3317 Target Full Sequence	3.0	PREDICTED: Zea mays uncharacterized LOC103654236 (LOC103654236), mRNA	NA	coding protein	psRNATarget