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BaseInfo

ncRNA ID	novel_zma_miR11823
Species	Zea mays
Class	miRNA
Genome position	Chr6:89298420-89298537 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AACGGUGUUCCCAAACUAGCCCUU - 24
Stem-loop(if miRNA)	--                C  A      -         CC                UUA   GGGCUAGUUUGGGAAC UC UUUUCC AAGGGAUUU  AUUUUCUUAAGGGAAA   G   |||||||||||||||| || |||||| |||||||||  ||||||||||||||||   U   CCCGAUCAAACCCUUG GG AAAAGG UUCCCUAAG  UAAAAGGGUUCCCUUU   U UU                U  C      A         AU                UAC
Stem-loop sequence	GGGCUAGUUUGGGAACCUCAUUUUCCAAGGGAUUUCCAUUUUCUUAAGGGAAAUUAGUUCAUUUUCCCUUGGGAAAAUUAGAAUCCCUUAGGAAAACGGUGUUCCCAAACUAGCCCUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238368.1	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   *||||||||||||||||||||*|| targets:9   UAGGGCUAGUUUGGGAACACCAUU   32 Target Full Sequence	1.5	Sequence 4363 from Patent EP2985353	NA	coding protein	psRNATarget
JB166839.1	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   *||||||||||||||||||||*|| targets:9   UAGGGCUAGUUUGGGAACACCAUU   32 Target Full Sequence	1.5	Sequence 4503 from Patent EP2559767	NA	coding protein	psRNATarget
HI406238.1	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   *||||||||||||||||||||*|| targets:9   UAGGGCUAGUUUGGGAACACCAUU   32 Target Full Sequence	1.5	Sequence 4363 from Patent EP2074227	NA	coding protein	psRNATarget
JB166699.1	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   *||||||||||||||||||||*|| targets:9   UAGGGCUAGUUUGGGAACACCAUU   32 Target Full Sequence	1.5	Sequence 4363 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238508.1	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   *||||||||||||||||||||*|| targets:9   UAGGGCUAGUUUGGGAACACCAUU   32 Target Full Sequence	1.5	Sequence 4503 from Patent EP2985353	NA	coding protein	psRNATarget
HI406378.1	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   *||||||||||||||||||||*|| targets:9   UAGGGCUAGUUUGGGAACACCAUU   32 Target Full Sequence	1.5	Sequence 4503 from Patent EP2074227	NA	coding protein	psRNATarget
EU947368.1	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   *|||||||||||||||||||*||| targets:289   UAGGGCUAGUUUGGGAACACAGUU   312 Target Full Sequence	1.5	Zea mays clone 341178 mRNA sequence	NA	coding protein	psRNATarget
BT068475.2	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   *||||||||||||||||||||*|| targets:52   UAGGGCUAGUUUGGGAACACCAUU   75 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0215I17 mRNA, complete cds	NA	coding protein	psRNATarget
BT068291.1	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   ***||||||||||||||||||*|| targets:1154   UUAGGCUAGUUUGGGAACACCAUU   1177 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0098O13 mRNA, complete cds	NA	coding protein	psRNATarget
AY109002.1	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   ||||*||*||||||||||||*||| targets:1013   AAGGCCUUGUUUGGGAACACAGUU   1036 Target Full Sequence	2.5	Zea mays PCO100205 mRNA sequence	NA	coding protein	psRNATarget
NM_001291671.1	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   |||*-||||||||||||||||*|| targets:1255   AAGU-CUAGUUUGGGAACACCAUU   1277 Target Full Sequence	1.5	Zea mays Protein TIC 21 chloroplastic (LOC100276039), mRNA	NA	coding protein	psRNATarget
BT062737.1	ncRNA:24   UUCCCGAUCAAACCCUUGUGGCAA   1   |||*-||||||||||||||||*|| targets:1255   AAGU-CUAGUUUGGGAACACCAUU   1277 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0339P11 mRNA, complete cds	NA	coding protein	psRNATarget