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BaseInfo

ncRNA ID novel_zma_miR11822
Species Zea mays
Class miRNA
Genome position Chr1:93530516-93530659 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 121 - AUUUCCACUGGCGGUUUUUAAAGC - 144
Stem-loop(if miRNA) --C      CA                                        UAAGA                U
   UUAAAA  ACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUUGUGU     UAACCGCCAGUGGAAA C
   ||||||  ||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||
   AAUUUU  UGGCGGUCACCUUUAUCCUACAAAGGUGACCGCCAACACA     GUUGGCGGUCACUUUU A
CGA      --                                        UUGUG                A
Stem-loop sequence CUUAAAACAACCGCCAGUGGAAAUAGGAUGUUUCCACUGGCGGUUGUGUUAAGAUAACCGCCAGUGGAAAUCAAUUUUCACUGGCGGUUGGUGUUACACAACCGCCAGUGGAAACAUCCUAUUUCCACUGGCGGUUUUUAAAGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT069194.2
ncRNA:24   CGAAAU-UUUUGGCGGUCACCUUUA   1
  ||||||-||||||||||||||||||
targets:845   GCUUUAUAAAACCGCCAGUGGAAAU   869

2.0 Zea mays full-length cDNA clone ZM_BFb0304H22 mRNA, complete cds NA coding protein psRNATarget
NM_001176701.1
ncRNA:24   CGAAAU-UUUUGGCGGUCACCUUUA   1
  ||||||-||||||||||||||||||
targets:845   GCUUUAUAAAACCGCCAGUGGAAAU   869

2.0 Zea mays uncharacterized LOC100384113 (LOC100384113), mRNA NA coding protein psRNATarget