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BaseInfo

ncRNA ID	novel_zma_miR11799
Species	Zea mays
Class	miRNA
Genome position	Chr6:167044844-167044983 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AUCGGACAUGUCCAGUGUGGCACC - 24
Stem-loop(if miRNA)	U    --AU -     A         G  AACAGA     GACUAACUGGCUCAACGGUCGUCUGCAAAAG  GUGC    C GGACA GUCCGGUGA CC      GCAAC                               C  ||||    | ||||| ||||||||| ||      |||||  CACG    G CCUGU CAGGCUACU GG      AAGCG                               A C    GUGU A     A         -  AGAUUG     AUGAGACUGCGCUUGACAAGUACAAUGACAA
Stem-loop sequence	UGUGCAUCGGACAAGUCCGGUGAGCCAACAGAGCAACGACUAACUGGCUCAACGGUCGUCUGCAAAAGCAAACAGUAACAUGAACAGUUCGCGUCAGAGUAGCGAAGUUAGAGGUCAUCGGACAUGUCCAGUGUGGCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ103080.1	ncRNA:24   CCACGGUGUGACCUGUACAGGCUA   1   ||||*|||||*|||||||||||=| targets:83   GGUGGCACACCGGACAUGUCCGGU   106 Target Full Sequence	2.5	TSA: Zea mays contig38737, mRNA sequence	NA	coding protein	psRNATarget
BT062406.1	ncRNA:24   CCACGGUGUGACCUGUACAGGCUA   1   ||*||||*=*|||||||||||||| targets:646   GGGGCCAAGGUGGACAUGUCCGAU   669 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0293C10 mRNA, complete cds	NA	coding protein	psRNATarget
AF004210.1	ncRNA:24   CCACGGUGUGACCUGUACAGGCUA   1   ||*||||*=*|||||||||||||| targets:948   GGGGCCAAGGUGGACAUGUCCGAU   971 Target Full Sequence	3.0	Zea mays cytochrome P-450 (CYP71C1) mRNA, partial cds	NA	coding protein	psRNATarget
EU955587.1	ncRNA:24   CCACGGUGUGACCUGUACAGGCUA   1   ||*||||*=*|||||||||||||| targets:1593   GGGGCCAAGGUGGACAUGUCCGAU   1616 Target Full Sequence	3.0	Zea mays clone 1538319 cytochrome P450 CYP71C1v2 mRNA, complete cds	NA	coding protein	psRNATarget
EU974830.1	ncRNA:24   CCACGGUGUGACCUGUACAGGCUA   1   ||*||||*=*|||||||||||||| targets:1593   GGGGCCAAGGUGGACAUGUCCGAU   1616 Target Full Sequence	3.0	Zea mays clone 459379 cytochrome P450 CYP71C1 mRNA, complete cds	NA	coding protein	psRNATarget
X81827.1	ncRNA:24   CCACGGUGUGACCUGUACAGGCUA   1   ||*||||*=*|||||||||||||| targets:1585   GGGGCCAAGGUGGACAUGUCCGAU   1608 Target Full Sequence	3.0	Z.mays CYP71C1 mRNA for cytochrome P-450	NA	coding protein	psRNATarget
NM_001294304.1	ncRNA:24   CCACGGUGUGACCUGUACAGGCUA   1   ||*||||*=*|||||||||||||| targets:1685   GGGGCCAAGGUGGACAUGUCCGAU   1708 Target Full Sequence	3.0	Zea mays Cytochrome P450 71C1 (CYP71C1), mRNA	NA	coding protein	psRNATarget
BT060735.1	ncRNA:24   CCACGGUGUGACCUGUACAGGCUA   1   ||*||||*=*|||||||||||||| targets:1685   GGGGCCAAGGUGGACAUGUCCGAU   1708 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0040O20 mRNA, complete cds	NA	coding protein	psRNATarget
AY105992.1	ncRNA:24   CCACGGUGUGACCUGUACAGGCUA   1   ||*||||*=*|||||||||||||| targets:1766   GGGGCCAAGGUGGACAUGUCCGAU   1789 Target Full Sequence	3.0	Zea mays PCO117584 mRNA sequence	NA	coding protein	psRNATarget
BT064736.1	ncRNA:24   CCACGGUGUGACCUGUACAGGCUA   1   ||*||||*=*|||||||||||||| targets:1982   GGGGCCAAGGUGGACAUGUCCGAU   2005 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0087D18 mRNA, complete cds	NA	coding protein	psRNATarget