Search result

BaseInfo

ncRNA ID	novel_zma_miR11798
Species	Zea mays
Class	miRNA
Genome position	Chr10:100915315-100915375 [+]
Reference genome	RefGen_v4
Source	SRR5100255;SRR1583942
Length	22
Mature sequence(if miRNA)	40 - AGGAGGAUGGAGCUUUCGACGA - 61
Stem-loop(if miRNA)	--    -U   -A           G    UG   GUCG  AGC  CGUCUUCCUCU GGUA  C   ||||  |||  ||||||||||| ||||  U   CAGC  UCG  GUAGGAGGAGG CCGU  C AG    UU   AG           A    CC
Stem-loop sequence	GUCGUAGCACGUCUUCCUCUGGGUAUGCUCCCUGCCAGGAGGAGGAUGGAGCUUUCGACGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU970756.1	ncRNA:22   AGCAGCUUUCGAGGUAGGAGGA   1   ***||||*||=||||||||||| targets:46   CAUUCGAUAGUUCCAUCCUCCU   67 Target Full Sequence	2.5	Zea mays clone 350111 mRNA sequence	NA	coding protein	psRNATarget
NM_001157255.1	ncRNA:21   GCAGCUUUCGAGGUAGGAGGA   1   **||||*||=||||||||||| targets:1   AUUCGAUAGUUCCAUCCUCCU   21 Target Full Sequence	2.5	Zea mays microtubule-associated protein 65-5 (AY110873), mRNA	NA	coding protein	psRNATarget
EU968020.1	ncRNA:21   GCAGCUUUCGAGGUAGGAGGA   1   **||||*||=||||||||||| targets:1   AUUCGAUAGUUCCAUCCUCCU   21 Target Full Sequence	2.5	Zea mays clone 312956 microtubule-associated protein MAP65-1a mRNA, complete cds	NA	coding protein	psRNATarget