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BaseInfo

ncRNA ID novel_zma_miR11790
Species Zea mays
Class miRNA
Genome position Chr6:136111794-136112019 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 1 - AAGGACACAGCCAGUGGAAAUAAC - 24
Stem-loop(if miRNA) ----AA    ACA             A     -     -C              U    CC   AU   -U    CC   C     A     CAC     A -      C      U
      GGAC   GCCAGUGGAAAUA CAUUU CACUG  GGUUCACUUAACAC ACCG  AGU  AAA  AGCU  UUU CACUG UGGUU   UUAAG G AACCGC AGUGGA C
      ||||   ||||||||||||| ||||| |||||  |||||||||||||| ||||  |||  |||  ||||  ||| ||||| |||||   ||||| | |||||| |||||| A
      CUUG   CGGUCACCUUUAU GUAAA GUGAC  CCAAGUGAAUUGUG UGGC  UCA  UUU  UCGA  AAA GUGAC GCCAA   AAUUC C UUGGUG UCACCU U
AAUUCA    --G             A     U     CA              U    UA   CU   UC    -U   U     C     UAA     A G      A      U
Stem-loop sequence AAGGACACAGCCAGUGGAAAUAACAUUUCACUGCGGUUCACUUAACACUACCGCCAGUAUAAAUAGCUCCUUUCCACUGAUGGUUCACUUAAGAGAACCGCCAGUGGAUCAUUUCCACUAGUGGUUGCACUUAAAAUAACCGCCAGUGUAAAUAGCUCUUUUUCACUAUCGGUUGUGUUAAGUGAACCACCAGUGUAAAUGAUAUUUCCACUGGCGGUUCACUUAA