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BaseInfo

ncRNA ID	novel_zma_miR11784
Species	Zea mays
Class	miRNA
Genome position	Chr6:111885185-111885283 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	76 - UACAAGUGGAUUGAGGUUAAUACU - 99
Stem-loop(if miRNA)	--                 A                     A   A  A   UAUUGACCUCAAUCCAC UGUGUUGAGGUGGAUUGGGGU UAA UU G   ||||||||||||||||| ||||||||||||||||||||| ||| || U   AUAAUUGGAGUUAGGUG ACAUAACUCCACCUAACCCCA AUU AA U UC                 A                     C   G  G
Stem-loop sequence	UAUUGACCUCAAUCCACAUGUGUUGAGGUGGAUUGGGGUAUAAAUUAGUUGAAGUUACACCCCAAUCCACCUCAAUACAAGUGGAUUGAGGUUAAUACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ239375.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||||||=||||||||||||||||| targets:18   AGUAUUGACCUCAAUCCACUUGUA   41 Target Full Sequence	1.0	Sequence 5370 from Patent EP2985353	NA	coding protein	psRNATarget
JB167706.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||||||=||||||||||||||||| targets:18   AGUAUUGACCUCAAUCCACUUGUA   41 Target Full Sequence	1.0	Sequence 5370 from Patent EP2559767	NA	coding protein	psRNATarget
HI407245.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||||||=||||||||||||||||| targets:18   AGUAUUGACCUCAAUCCACUUGUA   41 Target Full Sequence	1.0	Sequence 5370 from Patent EP2074227	NA	coding protein	psRNATarget
JB163822.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   |||||||||||||||||||*|||= targets:4   AGUAUUAACCUCAAUCCACAUGUG   27 Target Full Sequence	2.5	Sequence 1486 from Patent EP2559767	NA	coding protein	psRNATarget
HI403361.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   |||||||||||||||||||*|||= targets:4   AGUAUUAACCUCAAUCCACAUGUG   27 Target Full Sequence	2.5	Sequence 1486 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235491.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   |||||||||||||||||||*|||= targets:4   AGUAUUAACCUCAAUCCACAUGUG   27 Target Full Sequence	2.5	Sequence 1486 from Patent EP2985353	NA	coding protein	psRNATarget
HI403017.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||||||=||||||||||||*|||| targets:3   AGUAUUGACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1142 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235147.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||||||=||||||||||||*|||| targets:3   AGUAUUGACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1142 from Patent EP2985353	NA	coding protein	psRNATarget
JB163478.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||||||=||||||||||||*|||| targets:3   AGUAUUGACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1142 from Patent EP2559767	NA	coding protein	psRNATarget
HI402996.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||||||*||||||||||||*|||| targets:3   AGUAUUCACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1121 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235126.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||||||*||||||||||||*|||| targets:3   AGUAUUCACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1121 from Patent EP2985353	NA	coding protein	psRNATarget
JB163457.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||||||*||||||||||||*|||| targets:3   AGUAUUCACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1121 from Patent EP2559767	NA	coding protein	psRNATarget
HI402950.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||*|||=||||||||||||*|||| targets:3   AGCAUUGACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||*|||=||||||||||||*|||| targets:3   AGCAUUGACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
JB163411.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   ||*|||=||||||||||||*|||| targets:3   AGCAUUGACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
JB163470.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   **||||*||||||||||||*|||| targets:3   CAUAUUCACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1134 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235139.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   **||||*||||||||||||*|||| targets:3   CAUAUUCACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1134 from Patent EP2985353	NA	coding protein	psRNATarget
HI403009.1	ncRNA:24   UCAUAAUUGGAGUUAGGUGAACAU   1   **||||*||||||||||||*|||| targets:3   CAUAUUCACCUCAAUCCACAUGUA   26 Target Full Sequence	2.5	Sequence 1134 from Patent EP2074227	NA	coding protein	psRNATarget