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BaseInfo

ncRNA ID	novel_zma_miR11780
Species	Zea mays
Class	miRNA
Genome position	Chr6:105869376-105869430 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	21
Mature sequence(if miRNA)	35 - CAAUGUCCGGUGCGUCAGGCC - 55
Stem-loop(if miRNA)	--      A        --   C        CUUGGC CGCCGGAC  UGU CGGUGG   |||||| ||||||||  ||| |||||U   GGACUG GUGGCCUG  ACA GCCACG CC      C        UA   A
Stem-loop sequence	CUUGGCACGCCGGACUGUCCGGUGGUGCACCGAACAAUGUCCGGUGCGUCAGGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068871.2	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||||| targets:786   AGCCUGGCGCACCGGACAUUG   806 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||||| targets:786   AGCCUGGCGCACCGGACAUUG   806 Target Full Sequence	1.0	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
EZ101438.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   ||||||=|||||||||||*|| targets:12   GGCCUGGCGCACCGGACACUG   32 Target Full Sequence	2.5	TSA: Zea mays contig37094, mRNA sequence	NA	coding protein	psRNATarget
JB169499.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:7   AGCCUGGCGCACCGGACACUG   27 Target Full Sequence	2.5	Sequence 7163 from Patent EP2559767	NA	coding protein	psRNATarget
HI409038.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:7   AGCCUGGCGCACCGGACACUG   27 Target Full Sequence	2.5	Sequence 7163 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242313.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:7   AGCCUGGCGCACCGGACACUG   27 Target Full Sequence	2.5	Sequence 8308 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241168.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:7   AGCCUGGCGCACCGGACACUG   27 Target Full Sequence	2.5	Sequence 7163 from Patent EP2985353	NA	coding protein	psRNATarget
JB170644.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:7   AGCCUGGCGCACCGGACACUG   27 Target Full Sequence	2.5	Sequence 8308 from Patent EP2559767	NA	coding protein	psRNATarget
HI410183.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:7   AGCCUGGCGCACCGGACACUG   27 Target Full Sequence	2.5	Sequence 8308 from Patent EP2074227	NA	coding protein	psRNATarget
HI409440.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:7   AGCCUGGCGCACCGGACACUG   27 Target Full Sequence	2.5	Sequence 7565 from Patent EP2074227	NA	coding protein	psRNATarget
JB169901.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:7   AGCCUGGCGCACCGGACACUG   27 Target Full Sequence	2.5	Sequence 7565 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241570.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:7   AGCCUGGCGCACCGGACACUG   27 Target Full Sequence	2.5	Sequence 7565 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:793   AGCCUGGCGCACCGGACACUG   813 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:793   AGCCUGGCGCACCGGACACUG   813 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:777   AGCCUGGCGCACCGGACACUG   797 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:777   AGCCUGGCGCACCGGACACUG   797 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
EU940831.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:488   AGCCUGGCGCACCGGACACUG   508 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:2848   AGCCUGGCGCACCGGACACUG   2868 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||=|||||||||||*|| targets:4688   AGCCUGGCGCACCGGACACUG   4708 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
BT068112.2	ncRNA:21   CCGGACUGCGUGGCCUGUAAC   1   *|||||||||||||||||*|* targets:679   AGCCUGACGCACCGGACACUA   699 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget