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BaseInfo

ncRNA ID	novel_zma_miR11776
Species	Zea mays
Class	miRNA
Genome position	Chr5:88559434-88559600 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AAAAAAAACACUCGGCGAAGAAGC - 24
Stem-loop(if miRNA)	--AA                   A                 U     U                   U              UU     AAAAAACACUCGGCGAAGA GCUCUUUGCCGAGUGUU UAUUU UGACACUCGGCAAAGAGUU CUUUGCCGAGUGUC  U     ||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||  U     UUUUUUGUGAGCCGUUUCU CGAGAAACGGCUCACAA AUAAA ACUGUGAGCCGUUUCUCGG GAAACGGCUCACAG  U CCUC                   -                 C     C                   -              UU
Stem-loop sequence	AAAAAAAACACUCGGCGAAGAAGCUCUUUGCCGAGUGUUUUAUUUUUGACACUCGGCAAAGAGUUUCUUUGCCGAGUGUCUUUUUUUGACACUCGGCAAAGGGCUCUUUGCCGAGUGUCACAAAUACAACACUCGGCAAAGAGCUCUUUGCCGAGUGUUUUUUCUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406693.1	ncRNA:24   CGAAGAAGCGGCUCACAAAAAAAA   1   |||-|||=|||||||||||||||| targets:107   GCU-CUUUGCCGAGUGUUUUUUUU   129 Target Full Sequence	1.0	Sequence 4818 from Patent EP2074227	NA	coding protein	psRNATarget
JB167154.1	ncRNA:24   CGAAGAAGCGGCUCACAAAAAAAA   1   |||-|||=|||||||||||||||| targets:107   GCU-CUUUGCCGAGUGUUUUUUUU   129 Target Full Sequence	1.0	Sequence 4818 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238823.1	ncRNA:24   CGAAGAAGCGGCUCACAAAAAAAA   1   |||-|||=|||||||||||||||| targets:107   GCU-CUUUGCCGAGUGUUUUUUUU   129 Target Full Sequence	1.0	Sequence 4818 from Patent EP2985353	NA	coding protein	psRNATarget
EU949560.1	ncRNA:24   CGAAGAAGCGGCUCACAAAAAAAA   1   |*|||||=|||||||||||||||* targets:591   GGUUCUUUGCCGAGUGUUUUUUUC   614 Target Full Sequence	2.0	Zea mays clone 424771 mRNA sequence	NA	coding protein	psRNATarget
BT042352.1	ncRNA:24   CGAAGAAGCGGCUCACAAAAAAAA   1   **|||||=|||||*|||||||||| targets:1222   UAUUCUUUGCCGAUUGUUUUUUUU   1245 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0207J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148473.2	ncRNA:24   CGAAGAAGCGGCUCACAAAAAAAA   1   **|||||=|||||*|||||||||| targets:1272   UAUUCUUUGCCGAUUGUUUUUUUU   1295 Target Full Sequence	2.5	Zea mays Protein CHLORORESPIRATORY REDUCTION 6 chloroplastic (si707021b11), mRNA	NA	coding protein	psRNATarget