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BaseInfo

ncRNA ID novel_zma_miR11768
Species Zea mays
Class miRNA
Genome position Chr5:38089844-38090059 [+]
Reference genome RefGen_v4
Source SRR5100255
Length 21
Mature sequence(if miRNA) 196 - ACCGGCUCACCAUCGUUUGGC - 216
Stem-loop(if miRNA) --                        C                                     GA      C                    C  C  CUA     A
  CAGACGAUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCU  CUUCAU UGUGCGCUUCUCUUCUCUUA GU GG   CUAAG U
  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||| || ||   |||||
  GUUUGCUACCACUCGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCGGCGGGG  GAAGUA ACACGCGAAGAGAAGAGAAU CA CC   GAUUC C
CG                        U                                     UC      C                    C  C  CAC     A
Stem-loop sequence CAGACGAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCUGACUUCAUCUGUGCGCUUCUCUUCUCUUACGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCGCACACAUGAAGCUGGGGCGGCUUUAAAUUUUGUGACCACACAUCCGGACAUAGUACACCGGCUCACCAUCGUUUGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020538582.1
ncRNA:21   CGGUUUGCUACCACUCGGCCA   1
  ||||=||||||||||||||||
targets:3205   GCCAGACGAUGGUGAGCCGGU   3225

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020538581.1
ncRNA:21   CGGUUUGCUACCACUCGGCCA   1
  ||||=||||||||||||||||
targets:3343   GCCAGACGAUGGUGAGCCGGU   3363

1.0 PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA NA coding protein psRNATarget