ncRNA ID | novel_zma_miR11768 |
Species | Zea mays |
Class | miRNA |
Genome position | Chr5:38089844-38090059 [+] |
Reference genome | RefGen_v4 |
Source | SRR5100255 |
Length | 21 |
Mature sequence(if miRNA) | 196 - ACCGGCUCACCAUCGUUUGGC - 216 |
Stem-loop(if miRNA) |
--                        C                                     GA      C                    C  C  CUA     A   CAGACGAUGGUGAGCCGGUGUACU UGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCU  CUUCAU UGUGCGCUUCUCUUCUCUUA GU GG   CUAAG U   |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||||| || ||   |||||   GUUUGCUACCACUCGGCCACAUGA ACAGGCCUACACACCAGUGUUUUAAAUUUCGGCGGGG  GAAGUA ACACGCGAAGAGAAGAGAAU CA CC   GAUUC C CG                        U                                     UC      C                    C  C  CAC     A |
Stem-loop sequence | CAGACGAUGGUGAGCCGGUGUACUCUGUCCGGAUGUGUGGUCACAAAAUUUAAAGCCGCCCUGACUUCAUCUGUGCGCUUCUCUUCUCUUACGUCGGCUACUAAGAUCACUUAGCACCCCACCUAAGAGAAGAGAAGCGCACACAUGAAGCUGGGGCGGCUUUAAAUUUUGUGACCACACAUCCGGACAUAGUACACCGGCUCACCAUCGUUUGGC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_020538582.1 |
|
1.0 | PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X2, mRNA | NA | coding protein | psRNATarget | |||||||||
XM_020538581.1 |
|
1.0 | PREDICTED: Zea mays B3 domain-containing protein Os02g0598200 (LOC103628738), transcript variant X1, mRNA | NA | coding protein | psRNATarget |