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BaseInfo

ncRNA ID	novel_zma_miR11758
Species	Zea mays
Class	miRNA
Genome position	Chr10:90616777-90616985 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - GUCAUAAUAUCAUAUGUAGAGGCU - 24
Stem-loop(if miRNA)	--  C  A              G                                  C  U          A                        -     CUC   GU AU AUAUCAUAUGUAGA GCUGUGAUAAAAAUUUGAGAAAGUUUCGAGAAAG UG GACGUACUAU UGUAGAAACCUAGGAGAACUACAU UGAAA   U   || || |||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||| |||||   CA UA UAUAGUAUAUAUCU CGACACUAUUUUUAAACUCUUUCAAAGCUCUUUC AC CUGCAUGAUA ACAUCUUUGGAUCCUCUUGAUGUG ACUUU   A CA  U  C              A                                  A  U          C                        U     AGC
Stem-loop sequence	GUCAUAAUAUCAUAUGUAGAGGCUGUGAUAAAAAUUUGAGAAAGUUUCGAGAAAGCUGUGACGUACUAUAUGUAGAAACCUAGGAGAACUACAUUGAAACUCUACGAUUUCAUGUGUAGUUCUCCUAGGUUUCUACACAUAGUACGUCUCAACUUUCUCGAAACUUUCUCAAAUUUUUAUCACAGCAUCUAUAUAUGAUAUCAUUACAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020546111.1	ncRNA:24   UCGGAGAUGUAUACUAUAAUACUG   1   ||=|*|||||||||||||*||||| targets:4026   AGUCGCUACAUAUGAUAUCAUGAC   4049 Target Full Sequence	1.5	PREDICTED: Zea mays receptor-like protein 12 (LOC103642583), mRNA	NA	coding protein	psRNATarget
HI403222.1	ncRNA:24   UCGGAGAUGUAUACUAUAAUACUG   1   |*||||||=|||||||||*||||| targets:201   AACCUCUAUAUAUGAUAUCAUGAC   224 Target Full Sequence	2.5	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:24   UCGGAGAUGUAUACUAUAAUACUG   1   |*||||||=|||||||||*||||| targets:201   AACCUCUAUAUAUGAUAUCAUGAC   224 Target Full Sequence	2.5	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:24   UCGGAGAUGUAUACUAUAAUACUG   1   |*||||||=|||||||||*||||| targets:201   AACCUCUAUAUAUGAUAUCAUGAC   224 Target Full Sequence	2.5	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:24   UCGGAGAUGUAUACUAUAAUACUG   1   |*|||*||||||||||||*||||| targets:201   AACCUGUACAUAUGAUAUCAUGAC   224 Target Full Sequence	2.5	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
HI403220.1	ncRNA:24   UCGGAGAUGUAUACUAUAAUACUG   1   |*|||*||||||||||||*||||| targets:201   AACCUGUACAUAUGAUAUCAUGAC   224 Target Full Sequence	2.5	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
JB163681.1	ncRNA:24   UCGGAGAUGUAUACUAUAAUACUG   1   |*|||*||||||||||||*||||| targets:201   AACCUGUACAUAUGAUAUCAUGAC   224 Target Full Sequence	2.5	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
EU957830.1	ncRNA:24   UCGGAGAUGUAUACUAUAAUACUG   1   |***|*|||||||||||||||||= targets:2301   AUGAUAUACAUAUGAUAUUAUGAU   2324 Target Full Sequence	2.0	Zea mays clone 1624922 mRNA sequence	NA	coding protein	psRNATarget
NM_001323613.1	ncRNA:24   UCGGAGAUGUAUACUAUAAUACUG   1   |***|*|||||||||||||||||= targets:2174   AUGAUAUACAUAUGAUAUUAUGAU   2197 Target Full Sequence	2.0	Zea mays lysine-specific histone demethylase 1 (LOC101027113), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EU957883.1	ncRNA:24   UCGGAGAUGUAUACUAUAAUACUG   1   |***|*|||||||||||||||||= targets:1967   AUGAUAUACAUAUGAUAUUAUGAU   1990 Target Full Sequence	2.0	Zea mays clone 1629499 lysine-specific histone demethylase 1 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001279546.1	ncRNA:24   UCGGAGAUGUAUACUAUAAUACUG   1   |***|*|||||||||||||||||= targets:1967   AUGAUAUACAUAUGAUAUUAUGAU   1990 Target Full Sequence	2.0	Zea mays lysine-specific histone demethylase 1 (LOC101027113), mRNA	NA	coding protein	psRNATarget
XM_020541282.1	ncRNA:24   UCG--GAGAUGUAUACUAUAAUACUG   1   |||--|*|*||||||||*|||||||| targets:871   AGCUCCACCACAUAUGAGAUUAUGAC   896 Target Full Sequence	2.5	PREDICTED: Zea mays ABC transporter G family member 45 (LOC103640479), mRNA	NA	coding protein	psRNATarget