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BaseInfo

ncRNA ID novel_zma_miR11751
Species Zea mays
Class miRNA
Genome position Chr5:38934374-38934483 [-]
Reference genome RefGen_v4
Source SRR5100255
Length 21
Mature sequence(if miRNA) 90 - UGCACAUGAGAUGGACUGGCC - 110
Stem-loop(if miRNA) --    -      AU  A  G    AUGGG    -     ---       -AC   AUU
  UGCA CAUGAG  GG CU GCCU     GGGC GGAUC   CUCGUGU   GGG   G
  |||| ||||||  || || ||||     |||| |||||   |||||||   |||   G
  ACGU GUACUC  CC GA CGGG     UCCG CCUAG   GAGCACG   CUC   A
GC    U      --  -  G    GGAUA    A     AAU       AAA   GGG
Stem-loop sequence UGCACAUGAGAUGGACUGGCCUAUGGGGGGCGGAUCCUCGUGUACGGGAUUGGAGGGCUCAAAGCACGAGUAAGAUCCAGCCUAUAGGGGGCGAGCCCUCAUGUUGCACG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_020549459.1
ncRNA:21   CCGGUCAGGUAGAGUACACGU   1
  ||=||||||||||||||||||
targets:4782   GGUCAGUCCAUCUCAUGUGCA   4802

1.0 PREDICTED: Zea mays uncharacterized LOC100192909 (pco096800), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020539261.1
ncRNA:21   CCGGUCAGGUAGAGUACACGU   1
  |*=|||||||||||=||||||
targets:381   GAUCAGUCCAUCUCGUGUGCA   401

2.5 PREDICTED: Zea mays uncharacterized LOC103629447 (LOC103629447), mRNA NA coding protein psRNATarget
EU948993.1
ncRNA:21   CCGGUCAGGUAGAGUACACGU   1
  |*|||*|||||||||||||||
targets:172   GACCAAUCCAUCUCAUGUGCA   192

1.0 Zea mays clone 393064 mRNA sequence NA coding protein psRNATarget