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BaseInfo

ncRNA ID	novel_zma_miR11747
Species	Zea mays
Class	miRNA
Genome position	Chr5:19422360-19422504 [-]
Reference genome	RefGen_v4
Source	SRR1583942
Length	24
Mature sequence(if miRNA)	1 - CUUUACAGUCUACUCUAAAAGAUU - 24
Stem-loop(if miRNA)	--          A UG       U   ----A    AUAUUCUUUUAGGGGACAAAAUUUAGGGGACGUUGCUG   UCUUUUAGAG G  UUGUAAA GAC     GAGA                                      G   |||||||||| |  ||||||| |||     ||||                                      A   AGAAAAUCUC U  GACAUUU CUG     AUCU                                      G UU          A CU       C   CUUAU    CCUAUUUAUAUCUCCUAUAACGACCUCUGUCAGUGACA
Stem-loop sequence	UCUUUUAGAGAGUGUUGUAAAUGACAGAGAAUAUUCUUUUAGGGGACAAAAUUUAGGGGACGUUGCUGGAGACAGUGACUGUCUCCAGCAAUAUCCUCUAUAUUUAUCCUCUAUAUUCGUCCUUUACAGUCUACUCUAAAAGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008680375.2	ncRNA:24   UUAGAAAAUCUCAUCUGACAUUUC   1   ||||||||||||*||||||||||| targets:95   AAUCUUUUAGAGAAGACUGUAAAG   118 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103653485), mRNA	NA	coding protein	psRNATarget
XM_008662106.2	ncRNA:24   UUAGAAAAUCUCAUCUGACAUUUC   1   ||||||||||||*||||||||||| targets:3180   AAUCUUUUAGAGAAGACUGUAAAG   3203 Target Full Sequence	1.5	PREDICTED: Zea mays putative ribonuclease H protein At1g65750 (LOC103639340), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT083665.1	ncRNA:24   UUAGAAAAUCUCAUCUGACAUUUC   1   ||||||||||||*||||||||||* targets:872   AAUCUUUUAGAGGAGACUGUAAAA   895 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0026K10 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008660954.2	ncRNA:22   AGAAAAUCUCAUCUGACAUUUC   1   ||||||||||*||||||||||| targets:1   UCUUUUAGAGGAGACUGUAAAG   22 Target Full Sequence	1.5	PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008660953.2	ncRNA:22   AGAAAAUCUCAUCUGACAUUUC   1   ||||||||||*||||||||||| targets:1   UCUUUUAGAGGAGACUGUAAAG   22 Target Full Sequence	1.5	PREDICTED: Zea mays Anaphase-promoting complex subunit 4 (LOC103637954), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540284.1	ncRNA:24   UUA-GAAAAUCUCAUCUGACAUUUC   1   |||-=||||||||*||||||||||* targets:3475   AAUGUUUUUAGAGGAGACUGUAAAU   3499 Target Full Sequence	2.5	PREDICTED: Zea mays DNA photolyase (pco082395), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020540278.1	ncRNA:24   UUA-GAAAAUCUCAUCUGACAUUUC   1   |||-=||||||||*||||||||||* targets:3588   AAUGUUUUUAGAGGAGACUGUAAAU   3612 Target Full Sequence	2.5	PREDICTED: Zea mays DNA photolyase (pco082395), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020540279.1	ncRNA:24   UUA-GAAAAUCUCAUCUGACAUUUC   1   |||-=||||||||*||||||||||* targets:3658   AAUGUUUUUAGAGGAGACUGUAAAU   3682 Target Full Sequence	2.5	PREDICTED: Zea mays DNA photolyase (pco082395), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540281.1	ncRNA:24   UUA-GAAAAUCUCAUCUGACAUUUC   1   |||-=||||||||*||||||||||* targets:3667   AAUGUUUUUAGAGGAGACUGUAAAU   3691 Target Full Sequence	2.5	PREDICTED: Zea mays DNA photolyase (pco082395), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020540280.1	ncRNA:24   UUA-GAAAAUCUCAUCUGACAUUUC   1   |||-=||||||||*||||||||||* targets:3737   AAUGUUUUUAGAGGAGACUGUAAAU   3761 Target Full Sequence	2.5	PREDICTED: Zea mays DNA photolyase (pco082395), transcript variant X3, mRNA	NA	coding protein	psRNATarget