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BaseInfo

ncRNA ID	novel_zma_miR11746
Species	Zea mays
Class	miRNA
Genome position	Chr5:48044110-48044190 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AGGACCUAGUCGGUUGCUCCGCCU - 24
Stem-loop(if miRNA)	--     -  U  U    -   A     G    -UC C    U   GCGGA CA GC CGGC AGG CCUUG UCGA   G UCCG C   ||||| || || |||| ||| ||||| ||||   | |||| U   CGCCU GU UG GCUG UCC GGAAC AGUU   C AGGU C UC     C  -  -    A   A     -    CAU U    G
Stem-loop sequence	GCGGACAUGCUCGGCAGGACCUUGGUCGAUCGCUCCGUCUCGUGGAUCUACUUGACAAGGACCUAGUCGGUUGCUCCGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU968018.1	ncRNA:24   UCCG-CCUCGUUGGCUGAUCCAGGA   1   |*||-||||*|||||||*||||||| targets:429   AUGCUGGAGAAACCGACAAGGUCCU   453 Target Full Sequence	2.5	Zea mays clone 312920 PYM protein mRNA, complete cds	NA	coding protein	psRNATarget
BT060547.1	ncRNA:24   UCCG-CCUCGUUGGCUGAUCCAGGA   1   |*||-||||*|||||||*||||||| targets:412   AUGCUGGAGAAACCGACAAGGUCCU   436 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0014D04 mRNA, complete cds	NA	coding protein	psRNATarget
EU965991.1	ncRNA:24   UCCG-CCUCGUUGGCUGAUCCAGGA   1   |*||-||||*|||||||*||||||| targets:445   AUGCUGGAGAAACCGACAAGGUCCU   469 Target Full Sequence	2.5	Zea mays clone 290627 PYM protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156694.1	ncRNA:24   UCCG-CCUCGUUGGCUGAUCCAGGA   1   |*||-||||*|||||||*||||||| targets:445   AUGCUGGAGAAACCGACAAGGUCCU   469 Target Full Sequence	2.5	Zea mays PYM protein (LOC100283795), mRNA	NA	coding protein	psRNATarget
DQ244525.1	ncRNA:24   UCCG-CCUCGUUGGCUGAUCCAGGA   1   |*||-||||*|||||||*||||||| targets:431   AUGCUGGAGAAACCGACAAGGUCCU   455 Target Full Sequence	2.5	Zea mays clone 8851 mRNA sequence	NA	coding protein	psRNATarget
XM_008679540.2	ncRNA:24   UCCG-CCUCGUUGGCUGAUCCAGGA   1   |*||-||||*|||||||*||||||| targets:453   AUGCUGGAGAAACCGACAAGGUCCU   477 Target Full Sequence	2.5	PREDICTED: Zea mays PYM protein (LOC100283795), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008679536.2	ncRNA:24   UCCG-CCUCGUUGGCUGAUCCAGGA   1   |*||-||||*|||||||*||||||| targets:463   AUGCUGGAGAAACCGACAAGGUCCU   487 Target Full Sequence	2.5	PREDICTED: Zea mays PYM protein (LOC100283795), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679532.2	ncRNA:24   UCCG-CCUCGUUGGCUGAUCCAGGA   1   |*||-||||*|||||||*||||||| targets:467   AUGCUGGAGAAACCGACAAGGUCCU   491 Target Full Sequence	2.5	PREDICTED: Zea mays PYM protein (LOC100283795), transcript variant X1, mRNA	NA	coding protein	psRNATarget