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BaseInfo

ncRNA ID	novel_zma_miR11745
Species	Zea mays
Class	miRNA
Genome position	Chr5:33343653-33343778 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	103 - AUCCGACGUAAAUGAACAAGGCCU - 126
Stem-loop(if miRNA)	--                C       A  GA       GA    U   CG    GCUUC    AU   GCCUUGUUCGUUUGUG CGGAUUG UG  UCGGAAU  UUCC AGU  GAUU     UCUA  U   |||||||||||||||| ||||||| ||  |||||||  |||| |||  ||||     ||||  U   CGGAACAAGUAAAUGC GCCUAAC AU  GGCUUUA  AAGG UCG  UUAG     AGAU  A UC                A       -  -G       GC    -   -A    -UUUC    AU
Stem-loop sequence	GCCUUGUUCGUUUGUGCCGGAUUGAUGGAUCGGAAUGAUUCCUAGUCGGAUUGCUUCUCUAAUUUAUAUAGACUUUGAUUAGCUGGAACGAUUUCGGGUACAAUCCGACGUAAAUGAACAAGGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ516643.1	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |||||||||||=|||||||||||| targets:135   AGGCCUUGUUCGUUUACGUCGGAU   158 Target Full Sequence	1.5	TSA: Zea mays cultivar W22 CL45Contig1.betc, mRNA sequence	NA	coding protein	psRNATarget
NM_001138677.1	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |||||||||||=|||||||||||| targets:497   AGGCCUUGUUCGUUUACGUCGGAU   520 Target Full Sequence	1.5	Zea mays Small nuclear ribonucleoprotein family protein (IDP147), mRNA	NA	coding protein	psRNATarget
BT035867.1	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |||||||||||=|||||||||||| targets:497   AGGCCUUGUUCGUUUACGUCGGAU   520 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0086I01 mRNA, complete cds	NA	coding protein	psRNATarget
BT084172.1	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |||||||||||=|||||||||||| targets:512   AGGCCUUGUUCGUUUACGUCGGAU   535 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0084P16 mRNA, complete cds	NA	coding protein	psRNATarget
AY103713.1	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |||||||||||=|||||||||||| targets:527   AGGCCUUGUUCGUUUACGUCGGAU   550 Target Full Sequence	1.5	Zea mays PCO076540 mRNA sequence	NA	coding protein	psRNATarget
XM_008668968.2	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |||||||||||=|||||||||||| targets:586   AGGCCUUGUUCGUUUACGUCGGAU   609 Target Full Sequence	1.5	PREDICTED: Zea mays Small nuclear ribonucleoprotein family protein (IDP147), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU971977.1	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |||||||||||=|||||||||||| targets:723   AGGCCUUGUUCGUUUACGUCGGAU   746 Target Full Sequence	1.5	Zea mays clone 373036 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008676565.2	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |||||||||||=|||||||||||| targets:1086   AGGCCUUGUUCGUUUACGUCGGAU   1109 Target Full Sequence	1.5	PREDICTED: Zea mays NDR1/HIN1-like protein 10 (LOC103650970), mRNA	NA	coding protein	psRNATarget
XM_020549360.1	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |||=|||||||=|||||||||||| targets:1057   AGGUCUUGUUCGUUUACGUCGGAU   1080 Target Full Sequence	1.5	PREDICTED: Zea mays WRKY transcription factor WRKY76 (LOC103647425), mRNA	NA	coding protein	psRNATarget
AY103808.1	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   ||*||||||||=|||||||||||| targets:554   AGACCUUGUUCGUUUACGUCGGAU   577 Target Full Sequence	1.5	Zea mays PCO103670 mRNA sequence	NA	coding protein	psRNATarget
XM_008652540.2	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |*|||||||||=|||||||||||| targets:1358   AUGCCUUGUUCGUUUACGUCGGAU   1381 Target Full Sequence	1.5	PREDICTED: Zea mays plasma membrane-bound peroxidase 2b (PER70), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001158559.1	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |||*|||||||=|||||||||||| targets:1725   AGGGCUUGUUCGUUUACGUCGGAU   1748 Target Full Sequence	1.5	Zea mays uncharacterized LOC100285668 (IDP752), mRNA	NA	coding protein	psRNATarget
EU973341.1	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   |||*|||||||=|||||||||||| targets:1725   AGGGCUUGUUCGUUUACGUCGGAU   1748 Target Full Sequence	1.5	Zea mays clone 397038 catalytic/ protein phosphatase type 2C mRNA, complete cds	NA	coding protein	psRNATarget
XM_008650716.2	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   ||*||||||||=|||||||||||| targets:2582   AGACCUUGUUCGUUUACGUCGGAU   2605 Target Full Sequence	1.5	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020539318.1	ncRNA:24   UCCGGAACAAGUAAAUGCAGCCUA   1   ||*||||||||=|||||||||||| targets:2585   AGACCUUGUUCGUUUACGUCGGAU   2608 Target Full Sequence	1.5	PREDICTED: Zea mays heat shock 70 kDa protein 16-like (LOC103629632), transcript variant X1, mRNA	NA	coding protein	psRNATarget