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BaseInfo

ncRNA ID	novel_zma_miR11741
Species	Zea mays
Class	miRNA
Genome position	Chr5:60045760-60045876 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	23
Mature sequence(if miRNA)	1 - AAAAUAAAACACUCGGCAAAAAG - 23
Stem-loop(if miRNA)	--C   C         A   A               U  A C        G      A    UUU CCGAGUGUU UAU UUUGACACUCGGCAA GA U UCUUUGCC AGUGUU A    ||| ||||||||| ||| ||||||||||||||| || | |||||||| |||||| A    AAA GGCUCACAA AUA AAAUUGUGAGCUGUU CU A AGAAACGG UCACAA A GAA   C         A   A               U  C A        A      G
Stem-loop sequence	CUUUCCCGAGUGUUAUAUAUUUGACACUCGGCAAUGAAUCUCUUUGCCGAGUGUUAAAAGAACACUAGGCAAAGAAACUCUUUGUCGAGUGUUAAAAAUAAAACACUCGGCAAAAAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT060736.1	ncRNA:23   GAAAAACGGCUCACAAAAUAAAA   1   =|||||*=||||||||||||||| targets:1054   UUUUUUUUCGAGUGUUUUAUUUU   1076 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0040O21 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165647.1	ncRNA:23   GAA-AAACGGCUCACAAAAUAAAA   1   =||-||||=||||||||||*|||| targets:86   UUUCUUUGUCGAGUGUUUUCUUUU   109 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304195 (LOC100304195), mRNA	NA	coding protein	psRNATarget
BT055423.1	ncRNA:23   GAA-AAACGGCUCACAAAAUAAAA   1   =||-||||=||||||||||*|||| targets:86   UUUCUUUGUCGAGUGUUUUCUUUU   109 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0179M04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:23   GAA-AAACGGCUCACAAAAUAAAA   1   =||-||||=||||||||||*|||| targets:2105   UUUCUUUGUCGAGUGUUUUCUUUU   2128 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
NM_001152461.1	ncRNA:23   GAAAAACGGCUCACAAAAUAAAA   1   ||*|||||||||||||*|||||* targets:1988   CUCUUUGCCGAGUGUUGUAUUUG   2010 Target Full Sequence	2.5	Zea mays uncharacterized LOC100279456 (IDP836), mRNA	NA	coding protein	psRNATarget
BT054268.1	ncRNA:23   GAA-AAACGGCUCACAAAAUAAAA   1   =||-||||=||||||||||*|||| targets:2105   UUUCUUUGUCGAGUGUUUUCUUUU   2128 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
BT054268.1	ncRNA:23   GAAAAACGGCUCACAAAAUAAAA   1   ||*|||||||||||||*|||||* targets:1988   CUCUUUGCCGAGUGUUGUAUUUG   2010 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0206G23 mRNA, complete cds	NA	coding protein	psRNATarget
BT067191.1	ncRNA:23   GAAAAACGGCUCACAAAAUAAAA   1   |***|||*||||||||||=|||| targets:1969   CACAUUGGCGAGUGUUUUGUUUU   1991 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0279O15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001317230.1	ncRNA:23   GAAAAACGGCUCACAAAAUAAAA   1   |***|||*||||||||||=|||| targets:1969   CACAUUGGCGAGUGUUUUGUUUU   1991 Target Full Sequence	2.5	Zea mays Protein kinase superfamily protein (LOC100193908), mRNA	NA	coding protein	psRNATarget
EU970314.1	ncRNA:23   GAAAAACGGCUCACAAAAUAAAA   1   |***|||*||||||||||=|||| targets:1810   CACAUUGGCGAGUGUUUUGUUUU   1832 Target Full Sequence	2.5	Zea mays clone 343283 mRNA sequence	NA	coding protein	psRNATarget
EZ056771.1	ncRNA:23   GAAAAACGGCUCACAAAAUAAAA   1   |***|||*||||||||||=|||| targets:17   CACAUUGGCGAGUGUUUUGUUUU   39 Target Full Sequence	2.5	TSA: Zea mays contig57893, mRNA sequence	NA	coding protein	psRNATarget
AY108389.1	ncRNA:23   GAAAAACGGCUCACAAAAUAAAA   1   |***|||*||||||||||=|||| targets:301   CACAUUGGCGAGUGUUUUGUUUU   323 Target Full Sequence	2.5	Zea mays PCO081291 mRNA sequence	NA	coding protein	psRNATarget
BT036292.1	ncRNA:23   GAAAAACGGCUCACAAAAUAAAA   1   |***|||*||||||||||=|||| targets:1233   CACAUUGGCGAGUGUUUUGUUUU   1255 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0105F09 mRNA, complete cds	NA	coding protein	psRNATarget