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BaseInfo

ncRNA ID novel_zma_miR11738
Species Zea mays
Class miRNA
Genome position Chr5:69323186-69323245 [-]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 1 - AUUUUAGUCACUUUUAACUCUUCC - 24
Stem-loop(if miRNA) --AAU  C       A      U  ACUCU
     AG UAAAAGU ACUAAA UG     U
     || ||||||| |||||| ||
     UC AUUUUCA UGAUUU AC     U
CCUUC  A       C      U  CAUUU
Stem-loop sequence AAUAGCUAAAAGUAACUAAAUUGACUCUUUUUUACCAUUUUAGUCACUUUUAACUCUUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT066106.2
ncRNA:24   CCUUCUCAAUUUUCACUGAUUUUA   1
  |||||||*||||||||||||*|||
targets:886   GGAAGAGCUAAAAGUGACUACAAU   909

2.5 Zea mays full-length cDNA clone ZM_BFb0327N02 mRNA, complete cds NA coding protein psRNATarget
XM_020543912.1
ncRNA:24   CCUUCUCAAUUUUCACUGAUUUUA   1
  **|=|||*||||||||||||||||
targets:2278   UUAGGAGCUAAAAGUGACUAAAAU   2301

1.0 PREDICTED: Zea mays coronatine-insensitive protein homolog 2-like (LOC103638597), mRNA NA coding protein psRNATarget
EU944711.1
ncRNA:24   CCUUCUCAAUUUUCACUGAUUUUA   1
  *||=|||*|||||||||*||||||
targets:438   AGAGGAGCUAAAAGUGAAUAAAAU   461

2.5 Zea mays clone 227514 mRNA sequence NA coding protein psRNATarget
EU960756.1
ncRNA:24   CCUUCUCAAUUUUCACUGAUUUUA   1
  *||=|||*|||||||||*||||||
targets:1759   AGAGGAGCUAAAAGUGAAUAAAAU   1782

2.5 Zea mays clone 228330 solute carrier family 2, facilitated glucose transporter member 8 mRNA, complete cds NA coding protein psRNATarget
NM_001155307.1
ncRNA:24   CCUUCUCAAUUUUCACUGAUUUUA   1
  *||=|||*|||||||||*||||||
targets:1759   AGAGGAGCUAAAAGUGAAUAAAAU   1782

2.5 Zea mays solute carrier family 2, facilitated glucose transporter member 8 (LOC100282396), mRNA NA coding protein psRNATarget
BT067062.1
ncRNA:24   CCUUCUCAAUUUUCACUGAUUUUA   1
  |**||||*|||*||||||||||||
targets:1026   GCUAGAGCUAAUAGUGACUAAAAU   1049

2.5 Zea mays full-length cDNA clone ZM_BFb0174I15 mRNA, complete cds NA coding protein psRNATarget