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BaseInfo

ncRNA ID ath-miR5999
Species Arabidopsis thaliana
Class miRNA
Genome position chr1:7400802-7400992 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 151 - UCUUCACUAUUAGACGGACAA - 171
Stem-loop(if miRNA) --------------AA        CA                           A    ----------                   G            U UU  
                UAGAGGUU  AUUUAAUUUCUUCACUAUUAGACGGAC AAGU          GAAUAUAUAAAUAUAUCUU AUGUACAUAUCA U  UGU
                ||||||||  ||||||||||||||||||||||||||| ||||          ||||||||||||||||||| |||||||||||| |  ||G
                GUCUCUAA  UAAAUUAAAGGAGUGAUAAUCUGCCUG UUCA          CUUAUAUAUUUAUAUAGAA UACAUGUAUAGU A  ACA
UUCAGUUUUAAGUUUC        AC                           G    GCCUGGUUAA                   G            U UU  
Stem-loop sequence AAUAGAGGUUCAAUUUAAUUUCUUCACUAUUAGACGGACAAAGUGAAUAUAUAAAUAUAUCUUGAUGUACAUAUCAUUUUUGUGACAUUAUUGAUAUGUACAUGAAGAUAUAUUUAUAUAUUCAAUUGGUCCGACUUGGUCCGUCUAAUAGUGAGGAAAUUAAAUCAAAUCUCUGCUUUGAAUUUUGACUU

Reference

1 PMID:22221297
"Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology";
Zhang B, Xie D, Jin Z;
J Integr Plant Biol. 54:73-86(2012).