ncRNA ID | ath-miR5999 |
Species | Arabidopsis thaliana |
Class | miRNA |
Genome position | chr1:7400802-7400992 [-] |
Reference genome | TAIR10 |
Source | miRBase |
Length | 21 |
Mature sequence(if miRNA) | 151 - UCUUCACUAUUAGACGGACAA - 171 |
Stem-loop(if miRNA) |
--------------AA        CA                           A    ----------                   G            U UU                   UAGAGGUU  AUUUAAUUUCUUCACUAUUAGACGGAC AAGU          GAAUAUAUAAAUAUAUCUU AUGUACAUAUCA U  UGU                 ||||||||  ||||||||||||||||||||||||||| ||||          ||||||||||||||||||| |||||||||||| |  ||G                 GUCUCUAA  UAAAUUAAAGGAGUGAUAAUCUGCCUG UUCA          CUUAUAUAUUUAUAUAGAA UACAUGUAUAGU A  ACA UUCAGUUUUAAGUUUC        AC                           G    GCCUGGUUAA                   G            U UU   |
Stem-loop sequence | AAUAGAGGUUCAAUUUAAUUUCUUCACUAUUAGACGGACAAAGUGAAUAUAUAAAUAUAUCUUGAUGUACAUAUCAUUUUUGUGACAUUAUUGAUAUGUACAUGAAGAUAUAUUUAUAUAUUCAAUUGGUCCGACUUGGUCCGUCUAAUAGUGAGGAAAUUAAAUCAAAUCUCUGCUUUGAAUUUUGACUU |
1 | PMID:22221297
"Global analysis of non-coding small RNAs in Arabidopsis in response to jasmonate treatment by deep sequencing technology"; Zhang B, Xie D, Jin Z; J Integr Plant Biol. 54:73-86(2012). |