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BaseInfo

ncRNA ID	novel_zma_miR11729
Species	Zea mays
Class	miRNA
Genome position	Chr5:152975175-152975321 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - ACCGGACAUGUCUGGUGUGGCACC - 24
Stem-loop(if miRNA)	--   -               A    G  AACGGA CAAUGACUAACUAGCGCCAACAGUCGUCUGCCAAAAGUGA   UGU GCACCGGACAUGUCC GUGA CC      G                                        A   ||| ||||||||||||||| |||| ||      |   ACG UGUGGUCUGUACAGG CACU GG      C                                        C CC   G               C    -  ---AGA UGAAGCUACGAGACUGAAGACUGCGCGUGACAAGUAGUGA
Stem-loop sequence	UGUGCACCGGACAUGUCCAGUGAGCCAACGGAGCAAUGACUAACUAGCGCCAACAGUCGUCUGCCAAAAGUGAACAGUGAUGAACAGUGCGCGUCAGAAGUCAGAGCAUCGAAGUCAGAGGUCACCGGACAUGUCUGGUGUGGCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ103080.1	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   ||||*||||||=|||||||||||| targets:83   GGUGGCACACCGGACAUGUCCGGU   106 Target Full Sequence	1.5	TSA: Zea mays contig38737, mRNA sequence	NA	coding protein	psRNATarget
JB169806.1	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:77   GUUGGCGCACCGGACAUGUCCGGU   100 Target Full Sequence	2.5	Sequence 7470 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241475.1	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:77   GUUGGCGCACCGGACAUGUCCGGU   100 Target Full Sequence	2.5	Sequence 7470 from Patent EP2985353	NA	coding protein	psRNATarget
HI409345.1	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:77   GUUGGCGCACCGGACAUGUCCGGU   100 Target Full Sequence	2.5	Sequence 7470 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242178.1	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:89   GUUGGCGCACCGGACAUGUCCGGU   112 Target Full Sequence	2.5	Sequence 8173 from Patent EP2985353	NA	coding protein	psRNATarget
HI410048.1	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:89   GUUGGCGCACCGGACAUGUCCGGU   112 Target Full Sequence	2.5	Sequence 8173 from Patent EP2074227	NA	coding protein	psRNATarget
JB170509.1	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:89   GUUGGCGCACCGGACAUGUCCGGU   112 Target Full Sequence	2.5	Sequence 8173 from Patent EP2559767	NA	coding protein	psRNATarget
BT069634.1	ncRNA:24   CC-ACGGUGUGGUCUGUACAGGCCA   1   ||-||*|=||||=|||||||||||| targets:942   GGCUGGCGCACCGGACAUGUCCGGU   966 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176828.1	ncRNA:24   CC-ACGGUGUGGUCUGUACAGGCCA   1   ||-||*|=||||=|||||||||||| targets:942   GGCUGGCGCACCGGACAUGUCCGGU   966 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:602   GUUGGCGCACCGGACAUGUCCGGU   625 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:602   GUUGGCGCACCGGACAUGUCCGGU   625 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:427   GUUGGCGCACCGGACAUGUCCGGU   450 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:427   GUUGGCGCACCGGACAUGUCCGGU   450 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:2635   GUUGGCGCACCGGACAUGUCCGGU   2658 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:4474   GUUGGCGCACCGGACAUGUCCGGU   4497 Target Full Sequence	2.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CCACGGUGUGGUCUGUACAGGCCA   1   |*||*|=||||=|||||||||||| targets:450   GUUGGCGCACCGGACAUGUCCGGU   473 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget