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BaseInfo

ncRNA ID	novel_zma_miR11726
Species	Zea mays
Class	miRNA
Genome position	Chr5:158783195-158783312 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - AAAUUAGGCAGCGAACCAAACAGG - 24
Stem-loop(if miRNA)	--           -       CUA      ----------    -        A   A  A   G   UGUUUGGUUUG UGUCUAA   UGUCAC          ACUU UGUCUAAG UUA UU UUC A   ||||||||||| |||||||   ||||||          |||| |||||||| ||| || ||| A   ACAAACCAAGC ACGGAUU   AUAGUG          UGAA ACAGAUUC AAU AA AAG U GG           G       -AA      UAAAAUGAUG    C        A   C  A   U
Stem-loop sequence	UGUUUGGUUUGUGUCUAACUAUGUCACACUUUGUCUAAGAUUAAUUAUUCGAAUUGAAAAACUAAACUUAGACACAAGUGUAGUAAAAUGUGAUAAAUUAGGCAGCGAACCAAACAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945129.1	ncRNA:24   GGACAAACCAAGCGACGGAUUAAA   1   =|||||||||||||||=||||||| targets:534   UCUGUUUGGUUCGCUGUCUAAUUU   557 Target Full Sequence	1.5	Zea mays clone 241976 mRNA sequence	NA	coding protein	psRNATarget
EZ057573.1	ncRNA:24   GGACAAACCAAGCGACGGAUUAAA   1   *|||||||||||||||=||||||| targets:237   ACUGUUUGGUUCGCUGUCUAAUUU   260 Target Full Sequence	1.5	TSA: Zea mays contig58695, mRNA sequence	NA	coding protein	psRNATarget
BT038009.1	ncRNA:24   GGACAAACCAAGCGACGGAUUAAA   1   |||||||||||||||||||||*|| targets:265   CCUGUUUGGUUCGCUGCCUAACUU   288 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0206M21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661761.2	ncRNA:24   GGACAAACCAAGCGACGGAUUAAA   1   ==||||||||||||||=||||||| targets:3582   UUUGUUUGGUUCGCUGUCUAAUUU   3605 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103638977 (LOC103638977), mRNA	NA	coding protein	psRNATarget
XM_008656231.2	ncRNA:24   GGACAAACCAAGCGACGGAUUAAA   1   |||||||||||||||||||||*|| targets:5228   CCUGUUUGGUUCGCUGCCUAACUU   5251 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100216556), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163747.1	ncRNA:24   GGACAAACCAAGCGACGGAUUAAA   1   |*|||||||||||||||||||*|| targets:5   CAUGUUUGGUUCGCUGCCUAACUU   28 Target Full Sequence	1.5	Sequence 1411 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235416.1	ncRNA:24   GGACAAACCAAGCGACGGAUUAAA   1   |*|||||||||||||||||||*|| targets:5   CAUGUUUGGUUCGCUGCCUAACUU   28 Target Full Sequence	1.5	Sequence 1411 from Patent EP2985353	NA	coding protein	psRNATarget
HI403286.1	ncRNA:24   GGACAAACCAAGCGACGGAUUAAA   1   |*|||||||||||||||||||*|| targets:5   CAUGUUUGGUUCGCUGCCUAACUU   28 Target Full Sequence	1.5	Sequence 1411 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235522.1	ncRNA:24   GGACAAACCAAGCGACGGAUUAAA   1   =*|*|||||||||||||||||*|| targets:5   UAUUUUUGGUUCGCUGCCUAACUU   28 Target Full Sequence	1.5	Sequence 1517 from Patent EP2985353	NA	coding protein	psRNATarget
HI403392.1	ncRNA:24   GGACAAACCAAGCGACGGAUUAAA   1   =*|*|||||||||||||||||*|| targets:5   UAUUUUUGGUUCGCUGCCUAACUU   28 Target Full Sequence	1.5	Sequence 1517 from Patent EP2074227	NA	coding protein	psRNATarget
JB163853.1	ncRNA:24   GGACAAACCAAGCGACGGAUUAAA   1   =*|*|||||||||||||||||*|| targets:5   UAUUUUUGGUUCGCUGCCUAACUU   28 Target Full Sequence	1.5	Sequence 1517 from Patent EP2559767	NA	coding protein	psRNATarget