Search result

BaseInfo

ncRNA ID	novel_zma_miR11724
Species	Zea mays
Class	miRNA
Genome position	Chr9:9241214-9241277 [+]
Reference genome	RefGen_v4
Source	SRR1997865;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - CAUAGCACUCGGCAAAGAAGACAC - 24
Stem-loop(if miRNA)	--           G      A   ACAU       CAUAGCACUCG CAAAGA GAC    CUGGG   ||||||||||| |||||| |||    ||||C   GUGUUGUGAGU GUUUCU CUG    GACCA CG           A      -   AAAU
Stem-loop sequence	CAUAGCACUCGGCAAAGAAGACACAUCUGGGCACCAGUAAAGUCUCUUUGAUGAGUGUUGUGGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI406772.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *||*||||||||||||||*||||| targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	1.5	Sequence 4897 from Patent EP2074227	NA	coding protein	psRNATarget
JB167233.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *||*||||||||||||||*||||| targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	1.5	Sequence 4897 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238902.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *||*||||||||||||||*||||| targets:95   CUGCCUUCUUUGCCGAGUACUAUG   118 Target Full Sequence	1.5	Sequence 4897 from Patent EP2985353	NA	coding protein	psRNATarget
HI407067.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |**||*|||||||||||||||||| targets:11   GAUUCGUCUUUGCCGAGUGCUAUG   34 Target Full Sequence	1.0	Sequence 5192 from Patent EP2074227	NA	coding protein	psRNATarget
JB167528.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |**||*|||||||||||||||||| targets:11   GAUUCGUCUUUGCCGAGUGCUAUG   34 Target Full Sequence	1.0	Sequence 5192 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239197.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |**||*|||||||||||||||||| targets:11   GAUUCGUCUUUGCCGAGUGCUAUG   34 Target Full Sequence	1.0	Sequence 5192 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238769.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |||-||||||||||||||||*||* targets:165   GUG-CUUCUUUGCCGAGUGCCAUA   187 Target Full Sequence	2.5	Sequence 4764 from Patent EP2985353	NA	coding protein	psRNATarget
JB167100.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |||-||||||||||||||||*||* targets:165   GUG-CUUCUUUGCCGAGUGCCAUA   187 Target Full Sequence	2.5	Sequence 4764 from Patent EP2559767	NA	coding protein	psRNATarget
HI406639.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   |||-||||||||||||||||*||* targets:165   GUG-CUUCUUUGCCGAGUGCCAUA   187 Target Full Sequence	2.5	Sequence 4764 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240695.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *|***||||||||||||||=|||| targets:2   UUAGGUUCUUUGCCGAGUGUUAUG   25 Target Full Sequence	1.5	Sequence 6690 from Patent EP2985353	NA	coding protein	psRNATarget
HI408565.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *|***||||||||||||||=|||| targets:2   UUAGGUUCUUUGCCGAGUGUUAUG   25 Target Full Sequence	1.5	Sequence 6690 from Patent EP2074227	NA	coding protein	psRNATarget
JB169026.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   *|***||||||||||||||=|||| targets:2   UUAGGUUCUUUGCCGAGUGUUAUG   25 Target Full Sequence	1.5	Sequence 6690 from Patent EP2559767	NA	coding protein	psRNATarget
HI406743.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   ****|||||||*|||||||||||| targets:41   AAAGCUUCUUUACCGAGUGCUAUG   64 Target Full Sequence	1.5	Sequence 4868 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238873.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   ****|||||||*|||||||||||| targets:41   AAAGCUUCUUUACCGAGUGCUAUG   64 Target Full Sequence	1.5	Sequence 4868 from Patent EP2985353	NA	coding protein	psRNATarget
JB167204.1	ncRNA:24   CACAGAAGAAACGGCUCACGAUAC   1   ****|||||||*|||||||||||| targets:41   AAAGCUUCUUUACCGAGUGCUAUG   64 Target Full Sequence	1.5	Sequence 4868 from Patent EP2559767	NA	coding protein	psRNATarget