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BaseInfo

ncRNA ID	novel_zma_miR11704
Species	Zea mays
Class	miRNA
Genome position	Chr5:170119893-170119948 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - ACGGUCCGCGACCUGACGCGAGGC - 24
Stem-loop(if miRNA)	--  G       A      GC   -   A   AC GUCCGCG CCUGAC  GAG GCG C   || ||||||| ||||||  ||| |||   UG CAGGCGC GGACUG  CUC CGU G CC  G       -      GU   U   G
Stem-loop sequence	ACGGUCCGCGACCUGACGCGAGGCGACGGUGCUCUCUGGUCAGGCGCGGACGGUCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ096610.1	ncRNA:24   CGG---AGCGCAGUCCAGCGCCUGGCA   1   |||---||||||||||||||||||||| targets:53   GCCACGUCGCGUCAGGUCGCGGACCGU   79 Target Full Sequence	0.0	TSA: Zea mays contig32265, mRNA sequence	NA	coding protein	psRNATarget
LQ241898.1	ncRNA:24   CG-GAGCGCAGUCCAGCGCCUGGCA   1   ||-||=|||*|||||||=||||||| targets:5   GCUCUUGCGCCAGGUCGUGGACCGU   29 Target Full Sequence	2.5	Sequence 7893 from Patent EP2985353	NA	coding protein	psRNATarget
JB170229.1	ncRNA:24   CG-GAGCGCAGUCCAGCGCCUGGCA   1   ||-||=|||*|||||||=||||||| targets:5   GCUCUUGCGCCAGGUCGUGGACCGU   29 Target Full Sequence	2.5	Sequence 7893 from Patent EP2559767	NA	coding protein	psRNATarget
HI409768.1	ncRNA:24   CG-GAGCGCAGUCCAGCGCCUGGCA   1   ||-||=|||*|||||||=||||||| targets:5   GCUCUUGCGCCAGGUCGUGGACCGU   29 Target Full Sequence	2.5	Sequence 7893 from Patent EP2074227	NA	coding protein	psRNATarget
JB163540.1	ncRNA:24   CGGAGCGCAGUCCAGCGCCUGGCA   1   |||*=|||*|||||||||||=||| targets:7   GCCCUGCGCCAGGUCGCGGAUCGU   30 Target Full Sequence	2.5	Sequence 1204 from Patent EP2559767	NA	coding protein	psRNATarget
HI403079.1	ncRNA:24   CGGAGCGCAGUCCAGCGCCUGGCA   1   |||*=|||*|||||||||||=||| targets:7   GCCCUGCGCCAGGUCGCGGAUCGU   30 Target Full Sequence	2.5	Sequence 1204 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235209.1	ncRNA:24   CGGAGCGCAGUCCAGCGCCUGGCA   1   |||*=|||*|||||||||||=||| targets:7   GCCCUGCGCCAGGUCGCGGAUCGU   30 Target Full Sequence	2.5	Sequence 1204 from Patent EP2985353	NA	coding protein	psRNATarget
BT064568.2	ncRNA:24   CGGAGCGC-AGUCCAGCGCCUGGCA   1   *||*||||-|*|||||||||||||| targets:655   UCCCCGCGGUGAGGUCGCGGACCGU   679 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0183L06 mRNA, complete cds	NA	coding protein	psRNATarget
HI409322.1	ncRNA:24   CGGAGCGCAGUCCAGCGCCUGGCA   1   *|||-|||*||||||*|||||||| targets:23   UCCU-GCGCCAGGUCACGGACCGU   45 Target Full Sequence	2.5	Sequence 7447 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241452.1	ncRNA:24   CGGAGCGCAGUCCAGCGCCUGGCA   1   *|||-|||*||||||*|||||||| targets:23   UCCU-GCGCCAGGUCACGGACCGU   45 Target Full Sequence	2.5	Sequence 7447 from Patent EP2985353	NA	coding protein	psRNATarget
JB169783.1	ncRNA:24   CGGAGCGCAGUCCAGCGCCUGGCA   1   *|||-|||*||||||*|||||||| targets:23   UCCU-GCGCCAGGUCACGGACCGU   45 Target Full Sequence	2.5	Sequence 7447 from Patent EP2559767	NA	coding protein	psRNATarget