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BaseInfo

ncRNA ID	novel_zma_miR11691
Species	Zea mays
Class	miRNA
Genome position	Chr5:94162973-94163022 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	27 - GGUGGCCCGGGGUGUAGAUCCGCC - 50
Stem-loop(if miRNA)	--U     -AA            GG    GGAUC   GCCUUGGGCCAC  A    |||||   ||||||||||||  C    CCUAG   UGGGGCCCGGUG  C CCG     AUG            GG
Stem-loop sequence	UGGAUCAAGCCUUGGGCCACGGACCGGGUGGCCCGGGGUGUAGAUCCGCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU957399.1	ncRNA:24   CCGCCUAGAUGUGGGGCCCGGUGG   1   ||||||||||||||||||||||=* targets:761   GGCGGAUCUACACCCCGGGCCAUG   784 Target Full Sequence	2.5	Zea mays clone 1590868 thioredoxin H-type 5 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154559.1	ncRNA:24   CCGCCUAGAUGUGGGGCCCGGUGG   1   ||||||||||||||||||||||=* targets:761   GGCGGAUCUACACCCCGGGCCAUG   784 Target Full Sequence	2.5	Zea mays thioredoxin H-type 5 (LOC100281640), mRNA	NA	coding protein	psRNATarget
BT064308.2	ncRNA:24   CCGCCUAGAUGUGGGGCCCGGUGG   1   ||||||||||||||||*||||||| targets:82   GGCGGAUCUACACCCCAGGCCACC   105 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0158B21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663982.2	ncRNA:24   CCGCCUAGAUGUGGGGCCCGGUGG   1   *|||-||*|||||||=|||||||| targets:631   AGCG-AUAUACACCCUGGGCCACC   653 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF594) domain family protein (LOC100383473), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008663981.2	ncRNA:24   CCGCCUAGAUGUGGGGCCCGGUGG   1   *|||-||*|||||||=|||||||| targets:631   AGCG-AUAUACACCCUGGGCCACC   653 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF594) domain family protein (LOC100383473), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001176121.1	ncRNA:24   CCGCCUAGAUGUGGGGCCCGGUGG   1   *|||-||*|||||||=|||||||| targets:580   AGCG-AUAUACACCCUGGGCCACC   602 Target Full Sequence	2.5	Zea mays putative protein of unknown function (DUF594) domain family protein (LOC100383473), mRNA	NA	coding protein	psRNATarget
BT067307.1	ncRNA:24   CCGCCUAGAUGUGGGGCCCGGUGG   1   *|||-||*|||||||=|||||||| targets:580   AGCG-AUAUACACCCUGGGCCACC   602 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0377H18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008663980.2	ncRNA:24   CCGCCUAGAUGUGGGGCCCGGUGG   1   *|||-||*|||||||=|||||||| targets:632   AGCG-AUAUACACCCUGGGCCACC   654 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF594) domain family protein (LOC100383473), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020545184.1	ncRNA:24   CCGCCUAGAUGUGGGGCCCGGUGG   1   *|||-||*|||||||=|||||||| targets:631   AGCG-AUAUACACCCUGGGCCACC   653 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF594) domain family protein (LOC100383473), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008663979.2	ncRNA:24   CCGCCUAGAUGUGGGGCCCGGUGG   1   *|||-||*|||||||=|||||||| targets:632   AGCG-AUAUACACCCUGGGCCACC   654 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein of unknown function (DUF594) domain family protein (LOC100383473), transcript variant X1, mRNA	NA	coding protein	psRNATarget