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BaseInfo

ncRNA ID	novel_zma_miR11656
Species	Zea mays
Class	miRNA
Genome position	Chr4:170416322-170416455 [-]
Reference genome	RefGen_v4
Source	SRR5100255
Length	24
Mature sequence(if miRNA)	1 - ACUUGGAUGAGAAACGAAGGCACC - 24
Stem-loop(if miRNA)	--       A             GG    --     --- -- A  G  ACAUAGAAGAGACAGGUGGAGC   UGCCUUC UUUCUCAUCCAGG  GUGA  GGGCA   G  C GU GC                      G   ||||||| |||||||||||||  ||||  |||||   |  | || ||                      G   ACGGAAG AAAGAGUAGGUUC  CACU  UCUGU   G  U CA AG                      C CC       C             -A    UA     AAA GA -  A  AAAAUACACUGUGGGAACAACG
Stem-loop sequence	UGCCUUCAUUUCUCAUCCAGGGGGUGAGGGCAGCAGUGGCACAUAGAAGAGACAGGUGGAGCGGCGCAACAAGGGUGUCACAUAAAAGAAACUAGGAAAUGUCUAUUCACACUUGGAUGAGAAACGAAGGCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020544412.1	ncRNA:24   CCACGGAAGCAAAGAGUAGGUUCA   1   |||||||||*|||||=|||||||| targets:1671   GGUGCCUUCAUUUCUUAUCCAAGU   1694 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103640402 (LOC103640402), mRNA	NA	coding protein	psRNATarget
BT016654.1	ncRNA:24   CCACGGAAGCAAAGAGUAGGUUCA   1   ||**|||||||||=|||||||||| targets:847   GGAUCCUUCGUUUUUCAUCCAAGU   870 Target Full Sequence	1.5	Zea mays clone Contig487 mRNA sequence	NA	coding protein	psRNATarget
BT017211.1	ncRNA:24   CCACGGAAGCAAAGAGUAGGUUCA   1   ||**|||||*|||=|||||||||| targets:531   GGAUCCUUCCUUUUUCAUCCAAGU   554 Target Full Sequence	2.5	Zea mays clone EL01N0372B08.c mRNA sequence	NA	coding protein	psRNATarget
EU973820.1	ncRNA:24   CCACGGAAGCAAAGAGUAGGUUCA   1   ||**|||||*|||=|||||||||| targets:560   GGAUCCUUCCUUUUUCAUCCAAGU   583 Target Full Sequence	2.5	Zea mays clone 418506 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT086619.1	ncRNA:24   CCACGGAAGCAAAGAGUAGGUUCA   1   ||**|||||*|||=|||||||||| targets:1001   GGAUCCUUCCUUUUUCAUCCAAGU   1024 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0192D13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148739.1	ncRNA:24   CCACGGAAGCAAAGAGUAGGUUCA   1   ||**|||||*|||=|||||||||| targets:1419   GGAUCCUUCCUUUUUCAUCCAAGU   1442 Target Full Sequence	2.5	Zea mays uncharacterized LOC100274379 (LOC100274379), mRNA	NA	coding protein	psRNATarget
BT042893.1	ncRNA:24   CCACGGAAGCAAAGAGUAGGUUCA   1   ||**|||||*|||=|||||||||| targets:1419   GGAUCCUUCCUUUUUCAUCCAAGU   1442 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0059G09 mRNA, complete cds	NA	coding protein	psRNATarget