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BaseInfo

ncRNA ID	novel_zma_miR11647
Species	Zea mays
Class	miRNA
Genome position	Chr4:25315395-25315467 [+]
Reference genome	RefGen_v4
Source	SRR5100255
Length	21
Mature sequence(if miRNA)	53 - AUUUCUCCCCAUGGAUCCCCU - 73
Stem-loop(if miRNA)	--  A          C      C             A   GG AUCCAUGGGG AGAAAU CCCUUGUUAUUCA A   || |||||||||| |||||| |||||||||||||   CC UAGGUACCCC UCUUUA GGGAACGAUAAGU A UC  C          -      A             U
Stem-loop sequence	GGAAUCCAUGGGGCAGAAAUCCCCUUGUUAUUCAAAAUUGAAUAGCAAGGGAAUUUCUCCCCAUGGAUCCCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235077.1	ncRNA:21   UCCCCUAGGUACCCCUCUUUA   1   ||||||||||||||||||||| targets:36   AGGGGAUCCAUGGGGAGAAAU   56 Target Full Sequence	0.0	Sequence 1072 from Patent EP2985353	NA	coding protein	psRNATarget
JB163408.1	ncRNA:21   UCCCCUAGGUACCCCUCUUUA   1   ||||||||||||||||||||| targets:36   AGGGGAUCCAUGGGGAGAAAU   56 Target Full Sequence	0.0	Sequence 1072 from Patent EP2559767	NA	coding protein	psRNATarget
HI402947.1	ncRNA:21   UCCCCUAGGUACCCCUCUUUA   1   ||||||||||||||||||||| targets:36   AGGGGAUCCAUGGGGAGAAAU   56 Target Full Sequence	0.0	Sequence 1072 from Patent EP2074227	NA	coding protein	psRNATarget
EZ056613.1	ncRNA:21   UCCCCUAGGUACCCCUCUUUA   1   |||||||||||||||||=||| targets:90   AGGGGAUCCAUGGGGAGGAAU   110 Target Full Sequence	1.5	TSA: Zea mays contig57735, mRNA sequence	NA	coding protein	psRNATarget
BT087480.1	ncRNA:21   UCCCCUAGGUACCCCUCUUUA   1   |||||||||||||||||=||| targets:797   AGGGGAUCCAUGGGGAGGAAU   817 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0089I03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196706.1	ncRNA:21   UCCCCUAGGUACCCCUCUUUA   1   |||||||||||||||||=||| targets:797   AGGGGAUCCAUGGGGAGGAAU   817 Target Full Sequence	1.5	Zea mays hypothetical protein (LOC100502229), mRNA	NA	coding protein	psRNATarget
BT085386.2	ncRNA:21   UCCCCUAGGUACCCCUCUUUA   1   *||||=||||||||||*|||| targets:308   UGGGGGUCCAUGGGGACAAAU   328 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0005P17 mRNA, complete cds	NA	coding protein	psRNATarget
HI409984.1	ncRNA:21   UCCCCUAGGUACCCCUCUUUA   1   |**|||||*|||||||||||| targets:43   AUAGGAUCAAUGGGGAGAAAU   63 Target Full Sequence	2.5	Sequence 8109 from Patent EP2074227	NA	coding protein	psRNATarget
JB170445.1	ncRNA:21   UCCCCUAGGUACCCCUCUUUA   1   |**|||||*|||||||||||| targets:43   AUAGGAUCAAUGGGGAGAAAU   63 Target Full Sequence	2.5	Sequence 8109 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242114.1	ncRNA:21   UCCCCUAGGUACCCCUCUUUA   1   |**|||||*|||||||||||| targets:43   AUAGGAUCAAUGGGGAGAAAU   63 Target Full Sequence	2.5	Sequence 8109 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:21   UCCCCUAGGUACCCCUCUUUA   1   |**|*||=||||||||||||| targets:1319   ACCGAAUUCAUGGGGAGAAAU   1339 Target Full Sequence	3.0	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget