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BaseInfo

ncRNA ID novel_zma_miR11637
Species Zea mays
Class miRNA
Genome position Chr4:239817025-239817250 [-]
Reference genome RefGen_v4
Source SRR5100255
Length 24
Mature sequence(if miRNA) 203 - UUAGCUCUUGGACACUAGAAAUGG - 226
Stem-loop(if miRNA) --      C         A              U                    CA  AG          C       AA  A    A  -AA    U     A  A   U  U
  UUAGCU UUGGACACU GAAAUGGUACUAUU AUCAGGAACACACUGAGAAA  UU  UUAUUAUCAG GGCACAC  CA CGGU AA   UUUC AUUUU GA AAA CU A
  |||||| ||||||||| |||||||||||||| ||||||||||||||||||||  ||  |||||||||| |||||||  || |||| ||   |||| ||||| || ||| || C
  AAUCGA AACCUGUGA CUUUACCAUGAUAA UAGUCCUUGUGUGACUCUUU  AA  AGUAAUAGUC CUGUGUG  GU GCUA UU   AAAG UAAAG CU UUU GA A
GA      A         C              -                    AC  CA          C       GC  C    A  GAA    -     G  A   U  A
Stem-loop sequence UUAGCUCUUGGACACUAGAAAUGGUACUAUUUAUCAGGAACACACUGAGAAACAUUAGUUAUUAUCAGCGGCACACAACAACGGUAAAAAUUUCUAUUUUAGAAAAAUCUUACAAAGUUUUAUCGGAAAUGAAAAAGUUAAUCGCUGCGGUGUGUCCCUGAUAAUGAACAACAUUUCUCAGUGUGUUCCUGAUAAUAGUACCAUUUCCAGUGUCCAAAAGCUAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT066707.1
ncRNA:24   GGUAAAGAUCACAGGUUCUCGAUU   1
  *||||||||*|||||||*||||||
targets:602   ACAUUUCUAUUGUCCAAAAGCUAA   625

2.5 Zea mays full-length cDNA clone ZM_BFb0055L07 mRNA, complete cds NA coding protein psRNATarget